LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme45126g00001	GTGAGTACTAGTGGGAACATTGATATAGGGAAGGATACAAGCAGCTTTGCCCCTCAGGGTTCGGTGTCTTCTAATGGTACTGATGCAAGTGGTGGAAATGGTGGGAGTAATGGAAATGATGGCAAAAAGTCTTCTTCTCATGTAGCTTTGATTGTGTTTGCTGTGGTTGGGGCTGTGTTTGTTGCATCTTTGATTGGTTTCTTGGTTTTCTGCTTGCTTAGGATGAAGCAAAAGAAGTTAAGTAGGGTTCAAAGTCCGAATGCACTAGTTATTCACCCTCGACATTCTGGATCAGATAACGAAAGTGTGAAGATAACGGTTGCAGGTTCGAGTGTCAGTGTTGGAGGCGTGAGTGAAGCCCACGCCGTACCCAATAGTGAAATGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTAATTTCTATACAAGTTCTGAGGAGTGTCACAAACAATTTCAGCGAGAAAAATATATTGGGACAAGGAGGTTTTGGAACTGTTTATAAAGGTGAACTCCACGATGGTACAAGAATCGCAGTGAAAAGAATGGAGTGTGGAGCAATTGTTGGGAAGGGTGAAGCTGAATTTAAGTCTGAAATTGCGGTTTTGACAAAGGTTCGTCACAGACATCTTGTTACTCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACCCTAAGTAGGCATATTTTTAATTGGCCAGAAGAAGGACTCGAACCACTTGCATGGAATAGGAGACTGATCATTGCCTTAGATGTGGCAAGGGGCGTTGAGTACCTTCATAGCCTGGCTCATCAAAGCTTCATACACAGAGACTTGAAACCTTCAAACATTCTTCTTGGGGATGATATGAGGGCAAAGGTTGCAGACTTTGGTCTTGTGCGTCTCGCTCCAGAAGGAAAAGCCTCAATTGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCTCCAGAATATGCAG	991	0.4359	VSTSGNIDIGKDTSSFAPQGSVSSNGTDASGGNGGSNGNDGKKSSSHVALIVFAVVGAVFVASLIGFLVFCLLRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGVSEAHAVPNSEMGDIQMVEAGNMVISIQVLRSVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMECGAIVGKGEAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHIFNWPEEGLEPLAWNRRLIIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYA	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme45126g00001	330	FunFam	receptor protein kinase TMK1	115	230	-	-
	Trme45126g00001	330	ProSiteProfiles	Protein kinase domain profile.	153	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme45126g00001	330	Gene3D	Phosphorylase Kinase; domain 1	114	230	-	-
	Trme45126g00001	330	SMART	serkin_6	153	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme45126g00001	330	SUPERFAMILY	Protein kinase-like (PK-like)	130	329	IPR011009	-
	Trme45126g00001	330	FunFam	Os07g0541700 protein	231	321	-	-
	Trme45126g00001	330	MobiDBLite	consensus disorder prediction	1	41	-	-
	Trme45126g00001	330	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	278	290	IPR008271	GO:0004672\|GO:0006468
	Trme45126g00001	330	PANTHER	OSJNBA0070M12.3 PROTEIN	2	330	-	-
	Trme45126g00001	330	Pfam	Protein kinase domain	154	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme45126g00001	330	ProSitePatterns	Protein kinases ATP-binding region signature.	159	191	IPR017441	GO:0005524
	Trme45126g00001	330	Gene3D	Transferase(Phosphotransferase) domain 1	231	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme45126g00001	Trme-Chr45126	2	992	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme45126g00001	53	330	Trihelix Transcription Factor Family	AT1G70460	37.793	2.79e-61	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Trme45126g00001		Pkinase	8.1e-35	CL0016