Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45061g00001 ACTTCTTGGATTGATTACAAGACTGATGTGAATTCTCTTTCGGTTTTCTTGAGCTATTCTCCGATTAAGCCGCGTGATCCGATTCTTTTTGTAACCGTTGATCTTTCGGAGTATTTTAGAGGTAATGACAGTGTTTACGTTGGTTTTTCTGCTTCTGCTGAAAAAAGTACTGAACTTCATCAGATTGACAGTTGGAGTTTTTACACTGTTGGGTTTGAACCTGCAAGACCTAGGTTGCGGAGTCATAATGTTTCAGATAATTCTGTTAGTGTAAGTACCGGGAATGAGGGGGTGAGAAAATGTACGTCGAAGAATTTCGGAACTGGGATCGTTGGTCATGGTTCGTTTGGTACTGTATATAAAGCTTTCTTTATATCTTCTGGAACAATTGCTGCAGTGAAAAGATCGAGGCATTCTCACGAAGGAAAGACCGAGTTTCTTTCTGAATTGTCCATTATTGCTGGCTTAAGGTACAAGAATTTGGTTCAGTTGTTAGGTTGGTGTGTTGAGAAAGGAGAGTTGCTTCTTGTTTATGATTTCATGCCTAATGGAAGCTTAGACAAGATGCTTTACAAAGAACCTGAAAGGGGGAAGTTGTTGAATTGGTCTCATAGGGTTAACATTGTTGTTGGTTTGGCTTCTGTTTTGGTTTATCTTCATCAAGAATGTGAGCAAAGAGTGATTCATAGAGATATCAAAACTGCGAATGTTTTGCTTGATGGGAATTTCAATCCTAGGTTGGGTGATTTTGGATTGGCTAAACTCATGGATCATGATAAG 780 0.391 TSWIDYKTDVNSLSVFLSYSPIKPRDPILFVTVDLSEYFRGNDSVYVGFSASAEKSTELHQIDSWSFYTVGFEPARPRLRSHNVSDNSVSVSTGNEGVRKCTSKNFGTGIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRYKNLVQLLGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLNWSHRVNIVVGLASVLVYLHQECEQRVIHRDIKTANVLLDGNFNPRLGDFGLAKLMDHDK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45061g00001 260 Gene3D Transferase(Phosphotransferase) domain 1 182 260 - -
Trme45061g00001 260 SUPERFAMILY Protein kinase-like (PK-like) 107 259 IPR011009 -
Trme45061g00001 260 Gene3D - 1 114 - -
Trme45061g00001 260 Gene3D Phosphorylase Kinase; domain 1 115 181 - -
Trme45061g00001 260 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Trme45061g00001 260 FunFam Os07g0541700 protein 181 260 - -
Trme45061g00001 260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Trme45061g00001 260 PANTHER - 2 259 - -
Trme45061g00001 260 SMART serkin_6 105 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45061g00001 260 ProSiteProfiles Protein kinase domain profile. 105 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45061g00001 260 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 168 IPR013320 -
Trme45061g00001 260 Pfam Protein kinase domain 110 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45061g00001 260 Pfam Legume lectin domain 2 74 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45061g00001 Trme-Chr45061 1 999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45061g00001 1 260 Receptor kinase-like Gene Family AT5G55830 49.697 1.17e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme45061g00001 Pkinase 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45061g00001 - - qsa:O6P43_013542 355.91