Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme450263g00001 ATGAATCCTCGCATCCGCGCCGCTTATATAGACTGTCTTGAACTTCTAGACGATTCCGTCGACGCTCTTTCTCGTTCACTTACTTCCGTCGTACCTTCAGCTTCCTCCGGTGCCGTTAAGCCTCTTACAGCTTCCTCAACCGAGGATGTTCTCACGTGGCTTAGCGCCGCGCTAACTAACCAAGACACGTGTGCTGACGGTTTTTCCGACGTTTCCGGAGCGGTGAAAGATCAGATGGCGAGTAACATAAAAGATTTATC 260 0.5038 MNPRIRAAYIDCLELLDDSVDALSRSLTSVVPSASSGAVKPLTASSTEDVLTWLSAALTNQDTCADGFSDVSGAVKDQMASNIKDLS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme450263g00001 87 CDD PMEI-like_3 1 87 - -
Trme450263g00001 87 NCBIfam pectinesterase inhibitor domain 2 86 IPR006501 GO:0004857
Trme450263g00001 87 PANTHER PECTINESTERASE 6 82 - -
Trme450263g00001 87 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 87 IPR035513 -
Trme450263g00001 87 Pfam Plant invertase/pectin methylesterase inhibitor 7 81 IPR006501 GO:0004857
Trme450263g00001 87 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 85 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme450263g00001 Trme-Chr450263 34 293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme450263g00001 1 87 Carbohydrate Esterase AT5G53370 53.333 5.56e-24 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme450263g00001 - - qsa:O6P43_015006 123.25