Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44972g00001 ATGGCTGGTTTGGATTTAGGAAATGCATCAAGCTTTATGCAAAACCTTCACAGACAAAACTTACACCTTCAGCAACAACAACAGCAACACCATCAACACCAACACGATTCTGACGAACAACAAGAATCAAATCGTGTTGGTGGTGGTGGTGCAGCTCCGTTTTCATCAAACGATGAAGATGACCGAAGTCAAGGCTTGGAGCTAGGTTCAGCAGCCGGTCCAGGTGACGTGGTGGGACGCCGTCCACGCGGCAGACCACCGGGATCGAAAAACAAAGCAAAGCCGCCGGTGATCATCACCCGTGAGAGCGCCAACACTCTGAGGGCTCATATTCTTGAAGTAGCTAGCGGCTCCGATGTGTTTGAATGTGTAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGTCACTAATGTAAGTCTCCGGCAACCGGCGGCGGCTGGTGGTGTTGTGACACTAAATGGAAGATTTGAGATATTATCTTTGTCTGGATCTTTTCTTCCTCCACCTGCTCCTCCCGGAGCGACTAGCTTAACGATTTATCTCGCCGGAGGACAGGGACAGGTGGTCGGAGGAAGTGTGGTTGGTGAACTTATCGCAGCGGGACCGGTGATTGTGATTGCGGCTTCTTTTACTAATGTAGCTTATGAGAGGTTGCCCTTGGAAGAAGAGGAGCAAGTTCAGATTCAGGCTGGAGGTGGTGGTGGTGGTTCTCAAGGCTCTGGTGGTGGNNNNGGCGGCGGTGGAGGAAATAACAATCCATTTCCTGATCCTTCATCTGGTTTGCCGTTTTTCAATCTGCCAATGAATATGCAAAATGTTCATCAGCTGCCTGTTGATGGTTGGGCGGGAAATAATTCAGCTGCACGTCAGCCTTTTTGA 906 0.4669 MAGLDLGNASSFMQNLHRQNLHLQQQQQQHHQHQHDSDEQQESNRVGGGGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTXXXXXXXXXXXXXXXXXXVTNVSLRQPAAAGGVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLEEEEQVQIQAGGGGGGSQGSGGGXGGGGGNNNPFPDPSSGLPFFNLPMNMQNVHQLPVDGWAGNNSAARQPF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44972g00001 301 PIRSF ESCAROLA 8 301 IPR014476 GO:0003680
Trme44972g00001 301 Gene3D - 107 239 - -
Trme44972g00001 301 ProSiteProfiles PPC domain profile profile. 104 240 IPR005175 -
Trme44972g00001 301 MobiDBLite consensus disorder prediction 234 275 - -
Trme44972g00001 301 MobiDBLite consensus disorder prediction 8 28 - -
Trme44972g00001 301 CDD DUF296 108 191 IPR005175 -
Trme44972g00001 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 291 IPR014476 GO:0003680
Trme44972g00001 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Trme44972g00001 301 MobiDBLite consensus disorder prediction 1 99 - -
Trme44972g00001 301 MobiDBLite consensus disorder prediction 261 275 - -
Trme44972g00001 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44972g00001 Trme-Chr44972 19 924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44972g00001 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 60.127 2.20e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44972g00001 - - pvu:PHAVU_003G230600g 319.701