Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44919g00001 ATGGAGTACCTACACATGCTTGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTCGTTAGGGATGATGGACATATTATGCTCTCCGACTTTGACCTTTCCCTCCGATGTGCTGTTAGTCCAACCCTCGTTAAATCCTCTTCAATGGATTCGGAGCCTTTAAGAAAGAATACTGGTTACTGTGCTCAGCCTGCGTGTATTGAGCCGCCGTCCTGCATTCAGCCATCCTGTGTTGCTCCTACCTCATGTTTTTCACCTCGTCTCTTTTCTAGCAAATCAAAGAAAGAACGGAAGCCCAAAACTGAACTTGGCAATCAAGTTAGTCCTCTACCTGAGCTCATTGCAGAGCCTACCGATGCTCGGTCTATGTCATTTGTCGGAACCCACGAATACTTGGCACCTGAGATAATCAAGGGTGAAGGTCACGGGAGTGCAGTTGATTGGTGGACTTACGGAATCTTTCTATACGAGTTGTTGTTCGGCAAAACTCCATTTAAGGGATCCGGGAACCGAGCCACGCTGTTTAATGTGGTAGGTCAGCCGCTACGATTTCCCGAAGCACCTGTCGTTAGCTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCTCAACACAGATTGGCATATAAAAGAGGCGCAACCGAGATTAAGCAACATCCATTTTTCGAAG 682 0.4663 MEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSMDSEPLRKNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKERKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44919g00001 227 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44919g00001 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Trme44919g00001 227 Gene3D Transferase(Phosphotransferase) domain 1 1 81 - -
Trme44919g00001 227 PANTHER FLIPPASE KINASE 1-RELATED 1 227 - -
Trme44919g00001 227 Pfam Protein kinase domain 1 40 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44919g00001 227 Pfam Protein kinase domain 123 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44919g00001 227 SUPERFAMILY Protein kinase-like (PK-like) 1 226 IPR011009 -
Trme44919g00001 227 FunFam serine/threonine-protein kinase D6PK-like 121 227 - -
Trme44919g00001 227 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44919g00001 227 Gene3D Transferase(Phosphotransferase) domain 1 120 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44919g00001 Trme-Chr44919 32 713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44919g00001 1 227 AGC Kinase Gene Family AT5G47750 86.344 1.48e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme44919g00001 Pkinase 1.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44919g00001 K08286 - gmx:100798088 453.366