Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44886g00001 ATGTTCGTTATATTTCTTTTCACTCTCTGGTTTGAACAGGTGTGTGATACTGAGAATTCTGACATTGGCGTCTTATTTGACGAAGCTTGTGATTTTATAGAAGATGTTGAGAGAGGAGGTCAGAGAGTTTTAGTTCATTGCTTCGAAGGGAAAAGCAGAAGTGTCACTGTGCTCCTTGCTTACCTGATGCTCAGAAAGAACTTCACATTATTAGAAGCATGGAATGCTATGAGAAAAGTTCACCGTCGAGCGCAGCCTAATGATGGTTTTGCAAAGATCTTACAAGAACTTGATAAAAAACTGCACGGGAAAGTTTCGATGGAGTGGCAGCGGCGGAAACCAACAATGAAAGTTTGTCCTATATGTGGCAAGAATGCTGGACTGAGCAGCAGCTCACTTAAGCTACATCTTCAGAAATCTCATAAAAGGCTATCATCAGGGAGTGTTGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACCACTTTGAATATTAGCCGTGGTGGGAGTGTGAGCCCCAAACAAAGGCAAACTCACTCAATGACAGACTAA 555 0.418 MFVIFLFTLWFEQVCDTENSDIGVLFDEACDFIEDVERGGQRVLVHCFEGKSRSVTVLLAYLMLRKNFTLLEAWNAMRKVHRRAQPNDGFAKILQELDKKLHGKVSMEWQRRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLNISRGGSVSPKQRQTHSMTD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44886g00001 184 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 27 79 IPR000387 GO:0016311|GO:0016791
Trme44886g00001 184 SMART dsp_5 3 100 IPR020422 GO:0006470|GO:0008138
Trme44886g00001 184 CDD DSP 16 96 - -
Trme44886g00001 184 Pfam Dual specificity phosphatase, catalytic domain 14 98 IPR000340 GO:0008138|GO:0016311
Trme44886g00001 184 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 103 IPR020422 GO:0006470|GO:0008138
Trme44886g00001 184 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 7 183 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trme44886g00001 184 Gene3D Protein tyrosine phosphatase superfamily 7 124 IPR029021 -
Trme44886g00001 184 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 103 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44886g00001 Trme-Chr44886 95 969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44886g00001 6 169 Protein tyrosine phosphatase (PTP) family AT5G23720 70.732 1.22e-68 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44886g00001 K14165 K17614 ahf:112770730 274.633