Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44801g00001 ATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAACATTGATGTTGTCACTAATGGAGCCGAAGCCGTGCGAGCAGTTCAACGCTGTACTTATGACCTAATTCTGATGGATGTGTGTATGCCAGTTATGGATGGTCTTCAAGCAACAAAACTGATTCGGTCATCTGAGGAGACAGGCAATTGGGATGCTGCAAAACAAGCTGGAATCGAGCAAAGTGTACTCGATCGAGATTATGAATATCCCGATCCATCTACAAAGCGAATTCCCATTGTTGCGATGACAGCAAATGCTTTATCAGAGAGTGCTGAAGAATGTTTTGCCAATGGTATGGACTCATTTGTGTCAAAACCTGTGAGTTTGCAAAAGTTGAAAGAGTGTATTGAACAATATCTAAGGTGA 402 0.4204 MVTQSMMKQLGHNIDVVTNGAEAVRAVQRCTYDLILMDVCMPVMDGLQATKLIRSSEETGNWDAAKQAGIEQSVLDRDYEYPDPSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVSLQKLKECIEQYLR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44801g00001 133 SUPERFAMILY CheY-like 2 133 IPR011006 -
Trme44801g00001 133 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 2 132 - -
Trme44801g00001 133 Pfam Response regulator receiver domain 3 58 IPR001789 GO:0000160
Trme44801g00001 133 CDD REC_hyHK_CKI1_RcsC-like 1 128 - -
Trme44801g00001 133 SMART REC_2 1 128 IPR001789 GO:0000160
Trme44801g00001 133 ProSiteProfiles Response regulatory domain profile. 1 132 IPR001789 GO:0000160
Trme44801g00001 133 FunFam Histidine kinase 5 1 133 - -
Trme44801g00001 133 Gene3D - 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44801g00001 Trme-Chr44801 337 973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44801g00001 1 133 Histidine Kinase Gene Family AT5G10720 62.406 3.86e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme44801g00001 Response_reg 2.1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44801g00001 - - gmx:100811117 224.942