Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4479g00001 ATGGAACCTCGAAATGAATACCAGCCAGGATTGCCGTCAGTAATGCATGATCATATGGATGACATTTATACGAGTAGAAGACCGCATGACCTCAATACAGAAGAAGTTAAGCCGGTACAACATTACTCGATACAAACAGGCGAGGAATTCGCTCTTGAGTTTATGAGAGATAGAGCGAATCTCGGTAAGCCTGTATTTGCGAATGTCGGTGATCCGAATTATGCAACTGGTTATATGGAACTGAAAGGAATTTTAGGTATCAGTCACACAGGATCTGAAACTGGATCAGACATTTCCATGCTATCAATGATGGAGAAATATCCTAAAGAGTTTGATAGAAGCCAGTATGGATCAATTCGATCAATACCAAGATCTTCACTGAATCAAGACAACAGACAGTTTGTGCATGGATATAGCTCTTCCGAAAGTTATGATAACTCATCAATCATGATGAAGTTCCTTTGCAGCTTCNNNNNNNNNNANNNNNNNNNNANNNGTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGTATTCTCCGTATAAGAAAGGACATATCTTATCATGAACTCATTCAGAAAGCATTGGTGATCTATAACCAGGTTCATACAATCAAGTATCAGCTTCCTGGTGAAGATCTCGATGCTTTGGTATCTGTGTCATCCGACGAGGATATACAGAATATGATGGAAGAATATAATAATCAAGAAGATAGAGAAGGATCACAAAAACTTAGGATGTTTTTGTTCTCGATCAGGGATTTGGAGGATGCTCAGTTTGGTCTCNNNNNNNNNNANNNNNNNNNNGAAATCCAATATGTTATTGCTGTTAATGGCATGGACTTGGAATCAAGAAAAAACTCAACCATGGTCGGTTTCAGCTATTCTGCAAACGATATAAATGAATTGGACAGACAAAATATTGACGGTGCTAATGACAATGCTCCCCTGACACACAATTTTGACTCGTCATTGGGTACTCATTTTTCACAACCAGTGCTACCAACTTCCTCAAATTCATACGAAATG 1029 0.3761 MEPRNEYQPGLPSVMHDHMDDIYTSRRPHDLNTEEVKPVQHYSIQTGEEFALEFMRDRANLGKPVFANVGDPNYATGYMELKGILGISHTGSETGSDISMLSMMEKYPKEFDRSQYGSIRSIPRSSLNQDNRQFVHGYSSSESYDNSSIMMKFLCSFXXXXXXXXXDGKLRYVGGQTRILRIRKDISYHELIQKALVIYNQVHTIKYQLPGEDLDALVSVSSDEDIQNMMEEYNNQEDREGSQKLRMFLFSIRDLEDAQFGLXXXXXXXEIQYVIAVNGMDLESRKNSTMVGFSYSANDINELDRQNIDGANDNAPLTHNFDSSLGTHFSQPVLPTSSNSYEM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4479g00001 343 SMART PB1_new 165 252 IPR000270 GO:0005515
Trme4479g00001 343 Gene3D - 169 252 - -
Trme4479g00001 343 PANTHER OS05G0427100 PROTEIN-RELATED 140 323 - -
Trme4479g00001 343 CDD PB1_UP2 154 250 - -
Trme4479g00001 343 Pfam PB1 domain 167 250 IPR000270 GO:0005515
Trme4479g00001 343 SUPERFAMILY CAD & PB1 domains 167 254 - -
Trme4479g00001 343 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 170 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4479g00001 Trme-Chr4479 1189 2217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4479g00001 1 312 MAP Kinase Kinase Kinase AT1G79570 50.305 1.04e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4479g00001 - - gmx:100801946 476.478