Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme447341g00001 CCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACTGATTATGATGTAGGAGTGGACCTGTGGAGTGCTGGCTGTATTCTTGCTGAATTGTTGGCTGGAAGGCCTATTATGCCCGGCCGAACAGAGGTTGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGGCA 219 0.4475 PMTSRVVTLWYRSPELLLGATDYDVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKA 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme447341g00001 73 Pfam Protein kinase domain 2 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme447341g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme447341g00001 73 PANTHER CELL DIVISION PROTEIN KINASE 1 71 - -
Trme447341g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
Trme447341g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme447341g00001 Trme-Chr447341 1 292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme447341g00001 2 70 Core Cell Cycle Gene Families AT5G64960 66.667 1.53e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme447341g00001 Pkinase 5.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme447341g00001 K08819 - csin:114264866 149.828