Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4469g00001 GAAGTGCCAGAAAAGACCAAGGAAAGTGCAGGAGGACCATGGCAGTTTGTCGGTCTGTTGCCTCTCTTTGACCCGCCAAGGCATGACAGTGCAGAGACCATTAGACAAGCACTTCATCTTGGAGTAAATGTTAAGATGATTACAGGTGATCAGCTAGCTATTGGTAAGGAAACAGGTCGCAGGCTCGGCATGGGAAGTAACATGTATCCATCATCCTCCCTCCTTGGTGAACACAAGGATGCCTCAATTGCTTCCCTTCCGGTCGATGAACTTATTGAGAAGGCTGATGGATTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTAAAGAGACTCCAGGACAGGAAACACATATGTGGTATGACAGGAGATGGTGTGAATGATGCACCTGCATTGAAAAGAGCAGACATTGGAATTGCGGTGGCTGATGCAACTGATGCAGCTCGAGGTGCATCCGATATAGTCCTCACNGAGCCTGGTTTGAGTGTTATCGTCAGTGCAGTCCTCACAAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACGATTTATGCAGTTTCCATAACCATTCGAATTGTGCTTGGCTTTATGCTCCTTGCTCTAATTTGGAAATTTGATTTCTCTCCTTTTATGGTTTTGATCATTGCCATACTTAATGACGGCACAATCATGACCATTTCGAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGTTAAAAGAGATTTTCGCCACAGGAATAGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTTTGGGCTGCTCATGCATCTGATTTCTTCTCGGAAAAATTTGGAGTGAGATCAATCAGGGAAAATCACGCAGAGCTCACAGCTGCAGTTTACCTTCAAGTGAGTATTATTAGTCAGGCTCTCATCTTCGTTACACGCTCAAGGAGCTGGTCTTTCGTTGAACGTCCTGGCTTCTGGCTTCTGTTTGCCTTTCTCTTAGCACAACTGTTTGCCACATTGATAGCTGTGTATGCACATTGGGAGTTTGCAAGTATGAAAGGAATTGGATGGGGTTGGGCAGGTGTCATTTGGCTCTACAGCATTGTTACCTACATCCCATTGGATATCCTTAAGTTCTTCATCCGATATGCCTTGAGCGGCAAGGCATGGAATAATATTACTGAAAATAGGACTGCCTTCACATCAAAGAAGGATTATGGAAGGGGCGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTACACGGTTTGAATCCACCAGAAACCGAACAAGTTTTGGGTGAAGCTAACAGCTATAGAGAATTATCTGAACTTGCAGAACAAGCCAAGAAGCGTGCAGAAATTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGTCATGTGGAATCTGTTGTAAAACTGAAGGGACTTGACATTGAGACAATTCAGCAACACTACACTGTTTGA 1461 0.4456 EVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRQALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDASIASLPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIVLGAYLAVMTVVFFWAAHASDFFSEKFGVRSIRENHAELTAAVYLQVSIISQALIFVTRSRSWSFVERPGFWLLFAFLLAQLFATLIAVYAHWEFASMKGIGWGWAGVIWLYSIVTYIPLDILKFFIRYALSGKAWNNITENRTAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETEQVLGEANSYRELSELAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4469g00001 486 Gene3D - 123 381 - -
Trme4469g00001 486 Gene3D - 435 486 - -
Trme4469g00001 486 PANTHER CALCIUM-TRANSPORTING ATPASE 11 418 - -
Trme4469g00001 486 SUPERFAMILY HAD-like 15 169 IPR036412 -
Trme4469g00001 486 FunFam ATPase 4 plasma membrane-type 108 350 - -
Trme4469g00001 486 FunFam Plasma membrane ATPase 16 171 - -
Trme4469g00001 486 NCBIfam HAD-IC family P-type ATPase 98 208 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme4469g00001 486 Pfam haloacid dehalogenase-like hydrolase 18 137 - -
Trme4469g00001 486 Coils Coil 437 457 - -
Trme4469g00001 486 PRINTS P-type cation-transporting ATPase superfamily signature 146 158 - -
Trme4469g00001 486 PRINTS P-type cation-transporting ATPase superfamily signature 123 142 - -
Trme4469g00001 486 PRINTS P-type cation-transporting ATPase superfamily signature 18 29 - -
Trme4469g00001 486 PRINTS P-type cation-transporting ATPase superfamily signature 40 50 - -
Trme4469g00001 486 PRINTS H+-transporting ATPase (proton pump) signature 154 179 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme4469g00001 486 PRINTS H+-transporting ATPase (proton pump) signature 123 139 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme4469g00001 486 PRINTS H+-transporting ATPase (proton pump) signature 295 316 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme4469g00001 486 PRINTS H+-transporting ATPase (proton pump) signature 95 111 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme4469g00001 486 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 382 IPR023298 -
Trme4469g00001 486 Gene3D - 15 86 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4469g00001 Trme-Chr4469 67 1888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4469g00001 2 486 Primary Pumps ATPases AT2G18960 84.124 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4469g00001 K01535 - gmx:100782329 868.611