Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4466g00001 ATGGAGAAAATGAAGGAAGTAGCAAAGGGGAGAAGAGTGGAATGTGTAAAGTATCCATCAACTTTGCTGATGACTAATATTTGTCGAGGAATCTGGCTAACTACTTTCAGTGGAGTCTCCCAGTCCAACTACATTTCTCTATTCACAAGAGTTAAATGTAAACGAACCAGTGGCTTGAAATTCACAATGAGTGGAAGTTATGATTTCTATCAAGTCCTGATTACCAATGTAGCGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAATTACAACTGGATGGATACCAATGGCAAGGAATTGGGGACAAAATTGGCATTGCAATGTGAATCTTCAACAACAGTCTCTATCCTATGAGATGACTATCAAAAGTGTAAATTGGCAGTTTAGACAGACATTTGAAGGAAAACATTTCTAG 420 0.3881 MEKMKEVAKGRRVECVKYPSTLLMTNICRGIWLTTFSGVSQSNYISLFTRVKCKRTSGLKFTMSGSYDFYQVLITNVALDGEVVAVKVKGITTGWIPMARNWGQNWHCNVNLQQQSLSYEMTIKSVNWQFRQTFEGKHF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4466g00001 139 PANTHER EXPANSIN-A15 48 138 IPR002963 GO:0009664
Trme4466g00001 139 Pfam Expansin C-terminal domain 60 126 IPR007117 -
Trme4466g00001 139 SUPERFAMILY PHL pollen allergen 57 135 IPR036749 -
Trme4466g00001 139 PRINTS Expansin signature 104 125 IPR002963 GO:0009664
Trme4466g00001 139 PRINTS Expansin signature 57 69 IPR002963 GO:0009664
Trme4466g00001 139 PRINTS Expansin signature 69 90 IPR002963 GO:0009664
Trme4466g00001 139 Gene3D - 57 137 IPR036749 -
Trme4466g00001 139 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 68 139 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4466g00001 Trme-Chr4466 68 1554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4466g00001 34 139 Expansin Gene Family AT4G38210 50.000 7.24e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4466g00001 - - lja:Lj0g3v0263569.1 148.288