Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme44630g00001 | ACTGGTGGACACGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCATGCGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAGTACGCATGCCCTCTCTGTTCGAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCAATGCC | 305 | 0.423 | TGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATPMP | 102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme44630g00001 | 102 | ProSiteProfiles | Zinc finger RING-type profile. | 36 | 79 | IPR001841 | - | |
| Trme44630g00001 | 102 | SUPERFAMILY | RING/U-box | 34 | 84 | - | - | |
| Trme44630g00001 | 102 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1 | 35 | IPR017921 | - | |
| Trme44630g00001 | 102 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 3 | 102 | - | - | |
| Trme44630g00001 | 102 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 97 | IPR013083 | - | |
| Trme44630g00001 | 102 | Pfam | Ring finger domain | 35 | 78 | IPR001841 | - | |
| Trme44630g00001 | 102 | SMART | ring_2 | 36 | 78 | IPR001841 | - | |
| Trme44630g00001 | 102 | CDD | RING-H2_Pirh2-like | 35 | 79 | - | - | |
| Trme44630g00001 | 102 | SUPERFAMILY | Zinc hairpin stack | 2 | 29 | IPR037275 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme44630g00001 | Trme-Chr44630 | 357 | 1004 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme44630g00001 | 6 | 102 | C2H2 Transcription Factor Family | AT3G18290 | 40.206 | 2.85e-18 | 76.6 |