Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44516g00001 CTCGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCCAAACTTAAAGATGACGGATACACCCACATAACCACTAGAGTAGCAGGCACTTACGGATATATGGCTCCAGAATATGCAATGCATGGATATTTGACCGAGAAAGCCGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGCACAACACCATGAATTGGCCTAGGGATGAATGCTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAGGAAGAAGGTAACATAATGGACCTAATTGATGAGAG 299 0.4114 LDKDLNPKISDFGLAKLKDDGYTHITTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMNWPRDECFSLVDWVHLLKEEGNIMDLIDE 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44516g00001 99 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Trme44516g00001 99 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 99 - -
Trme44516g00001 99 SUPERFAMILY Protein kinase-like (PK-like) 1 87 IPR011009 -
Trme44516g00001 99 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44516g00001 99 Pfam Protein tyrosine and serine/threonine kinase 3 81 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44516g00001 Trme-Chr44516 3 685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44516g00001 1 98 Receptor kinase-like Gene Family AT1G07650 71.429 2.88e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme44516g00001 PK_Tyr_Ser-Thr 3.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44516g00001 - - psat:127081874 194.126