Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44480g00001 CCCAACTCTTCCATCCTCACAAATCCAACAGAGCTTAATCCCCATTCAGATCCTATCTCACTAGACTTATCACTTAATTTCAACATCAACAATGACTTGGTTGCTAGAGATTCAACAGGAATCTCATTCTCAAGCACCAGTGAGACTGAGAGCAGCAATGAACCTATCATCCCAAGAGTTTTCTCTTGCAATTACTGTCGGCGCAAATTTTATAGCTCTCAGGCACTCGGTGGACACCAAAATGCACACAAGAGAGAAAGAACATTAGCGAAACGAGCTATGCGAATGGGACTATTTGCCGAGAGGTACGCAAGTTTAGCATCTCTCCCTCTAAATGGTAATTCTTTCAGGTCCTTAGAACTGTTCTGGCAAGGTAGTTTCCATCAGGTTACTGACGGTGGAAGGGTTGGATCAACACATTGGAAATTGAACAACCACACAAGTGACTTTGACATCACAGGAAGTAATACTCGTCAGAGTTCAAATCTGTGTTTTACTGAG 501 0.4271 PNSSILTNPTELNPHSDPISLDLSLNFNINNDLVARDSTGISFSSTSETESSNEPIIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTLAKRAMRMGLFAERYASLASLPLNGNSFRSLELFWQGSFHQVTDGGRVGSTHWKLNNHTSDFDITGSNTRQSSNLCFTE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44480g00001 167 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 130 IPR044246 GO:0009788
Trme44480g00001 167 Gene3D Classic Zinc Finger 38 106 - -
Trme44480g00001 167 SUPERFAMILY beta-beta-alpha zinc fingers 59 88 IPR036236 -
Trme44480g00001 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Trme44480g00001 167 FunFam Zinc finger protein 2 38 107 - -
Trme44480g00001 167 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44480g00001 Trme-Chr44480 370 1005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44480g00001 14 97 C2H2 Transcription Factor Family AT1G24625 59.524 2.75e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme44480g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44480g00001 - - pvy:116118018 160.229