Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44479g00001 GTCAGGATCTGCCGAGAGAAGACAACTGGTCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGGTTCGCCGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACTTACTTGCAGAAGTTGACAGCAATTACATTGTAAAGCTTTACTGTTCCTTTCAAGACCAGGATTATTTATATCTTATAATGGAGTATCTTCCTGGTGGCGATATGATGACATTGCTCATGCGGAAGGATATACTGTCAGAATATGAGGCCAAGTTCTACGTTGGGGAGACTGTCCTAGCTATAGAGTCGATTCATAAACATAATTATGTTCACAGAGATATCAAGCCTGATAACCTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCATTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAATCAGCAGAAGCGGAGTCCTTCAGAGCAACGGACAACCTGTGGCTCCTAAAAGGACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGTAAGTCACATCAAATATGCATAA 570 0.414 VRICREKTTGHVYAMKKLKKSEMVRRGQVEHVKAERNLLAEVDSNYIVKLYCSFQDQDYLYLIMEYLPGGDMMTLLMRKDILSEYEAKFYVGETVLAIESIHKHNYVHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGISRSGVLQSNGQPVAPKRTQQEQLQHWQKNRRMLVSHIKYA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44479g00001 189 Gene3D Transferase(Phosphotransferase) domain 1 74 187 - -
Trme44479g00001 189 Pfam Protein kinase domain 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44479g00001 189 SMART serkin_6 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44479g00001 189 MobiDBLite consensus disorder prediction 151 174 - -
Trme44479g00001 189 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44479g00001 189 SUPERFAMILY Protein kinase-like (PK-like) 1 139 IPR011009 -
Trme44479g00001 189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Trme44479g00001 189 Gene3D Phosphorylase Kinase; domain 1 1 73 - -
Trme44479g00001 189 FunFam Non-specific serine/threonine protein kinase 71 138 - -
Trme44479g00001 189 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44479g00001 Trme-Chr44479 131 910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44479g00001 1 183 AGC Kinase Gene Family AT4G14350 84.153 3.05e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trme44479g00001 Pkinase 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44479g00001 K08790 - gmx:100795087 347.821