Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44478g00001 GCTCACGTAAAAGAGCTAGAGGAAGAAGTTAAACTGCTTAAAGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACRGTCAGAGAAGAAGATACCTTAAATATTCTCCTTGAGTTTGTTCCTGGTGGATCCATATCTTCACTTTTGGGGAAGTTTGGAGCTTTTCCTGAGGCCGTCATAAGAACTTACACGAAGCAGATATTACTTGGACTCGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAAGTAGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTGTAA 423 0.4161 AHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKVADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44478g00001 140 SMART serkin_6 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44478g00001 140 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 139 - -
Trme44478g00001 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44478g00001 140 Gene3D Transferase(Phosphotransferase) domain 1 1 139 - -
Trme44478g00001 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Trme44478g00001 140 SUPERFAMILY Protein kinase-like (PK-like) 3 138 IPR011009 -
Trme44478g00001 140 Pfam Protein kinase domain 5 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44478g00001 Trme-Chr44478 120 900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44478g00001 1 140 MAP Kinase Kinase Kinase AT1G54960 87.857 4.07e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme44478g00001 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44478g00001 K20606 - gmx:100779001 264.233