Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44467g00001 AAGTTCCATGAAATGAATGGACAGTACATAACGCGTATGAAAGAGGGTATTCGGGAACTCATGGTCAGTGCAGATAACCAGGGACAAATACTTACTTTTCAAAATGTTTTGCAGAACAGGTCTGACATATCCTATGATGTCCTAGTGAAGTGTCACCTAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTAGTCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATTTATCATGTCGAAATCAGTTGCATGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAACGGTTTTTGCAGGGAATGTATGTGTGTTGTGTGTTCTAAGTTTGACAATGCGTCGAGCACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCTTATATTAGAAATGGACTTAGTACTACTGGAACGAAAGGGACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGATTGGTCACCCGAATCTCTTTGCAAGGAACTTGAATATGTGAAGAGAATCTTTTCTGCTAGCAAGGATATTAGAGGGAGACAGTTGCATGAGATTGCGGATAAAATGTTGCCNNNNNNNNNNANNNNNNNNNNAATTCCTGAGGTTTTAAGACACATCATGTCTTTCTTTTCTGGTAAGTAA 777 0.3822 KFHEMNGQYITRMKEGIRELMVSADNQGQILTFQNVLQNRSDISYDVLVKCHLAQLEILVALKTGVVHYLHLDDNISSSDLAQVFLNLKCRNLSCRNQLHVDECDCKLCVQKNGFCRECMCVVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGLSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSPESLCKELEYVKRIFSASKDIRGRQLHEIADKMLPXXXXXXXIPEVLRHIMSFFSGK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 55 70 IPR004082 -
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1 21 IPR004082 -
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 127 147 IPR004082 -
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 200 219 IPR004082 -
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 81 102 IPR004082 -
Trme44467g00001 258 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 40 55 IPR004082 -
Trme44467g00001 258 CDD PHD_OBE1_like 120 179 IPR047578 -
Trme44467g00001 258 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 256 IPR004082 -
Trme44467g00001 258 Pfam PHD - plant homeodomain finger protein 90 213 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44467g00001 Trme-Chr44467 67 843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44467g00001 90 235 PHD Gene Family AT5G57380 26.712 1.47e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44467g00001 - - ahf:112789425 437.187