Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme444379g00001 CTGGACACATACCACACTTTTACCGTTGCTGTTGATGCCCCAGGGTTCATTGCTCGGGACATTACATTTAGGAACACCGCAGGTCCCGAAAACCATCAAGCAGTGGCATTATTGTCAAACTCTAACACCTCTGTCTTATACGATGTGGAATCCATGGCTTCCAAGACAGTTTATGTGCGAACACAGGACTCCAATTCTATAAGGACTGCAAAATCAGTGGTTCGTTAG 228 0.4561 MDTYHTFTVAVDAPGFIARDITFRNTAGPENHQAVALLSNSNTSVLYDVESMASKTVYVRTQDSNSIRTAKSVVR 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme444379g00001 75 Gene3D - 1 73 IPR012334 -
Trme444379g00001 75 PANTHER PECTINESTERASE 2 62 - -
Trme444379g00001 75 SUPERFAMILY Pectin lyase-like 2 50 IPR011050 -
Trme444379g00001 75 Pfam Pectinesterase 2 61 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme444379g00001 Trme-Chr444379 2 229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme444379g00001 3 47 Carbohydrate Esterase AT4G00190 64.444 1.94e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme444379g00001 K01051 - pop:7476742 72.4034