Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme443870g00001 GGTGCTGAGCAAGTTCATGTCATTGATTTTGATATCATGGAGGGAATCCAATGGCCACCATTGGTGGTTGACTTTGCAATGAGAAAGAACACTACTTCCCTTAGAGTAACAGCAATCGCAATGGATCAGCAAAGTGCAGCCTCAGTTCAACAAACAGGAAGAAGGCTCAATGAGTTCGCGGATTCAATCAATTTCCCATTTGTGTTCGATACGATGATGATGGTGAGTGATGAAGATTTACAAGGAATTGAACTTGGTGGCACGCTTATTGTCAATTGTATGATACATCAGTGG 294 0.4218 GAEQVHVIDFDIMEGIQWPPLVVDFAMRKNTTSLRVTAIAMDQQSAASVQQTGRRLNEFADSINFPFVFDTMMMVSDEDLQGIELGGTLIVNCMIHQW 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme443870g00001 98 ProSiteProfiles GRAS family profile. 1 98 IPR005202 -
Trme443870g00001 98 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 96 IPR005202 -
Trme443870g00001 98 Pfam GRAS domain family 2 95 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme443870g00001 Trme-Chr443870 1 294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme443870g00001 1 69 GRAS Transcription Factor Family AT5G41920 44.286 2.21e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme443870g00001 GRAS 1.2e-22 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme443870g00001 - - lja:Lj0g3v0198459.1 157.147