LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme44268g00001	TGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGTTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGGTGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTCGGTGAGGTCGAGGTTATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAACCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTAAAAGGCTCTATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCGTGGCTGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTG	539	0.4193	CDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLH	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme44268g00001	179	ProSiteProfiles	JmjC domain profile.	120	179	IPR003347	-
	Trme44268g00001	179	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	38	179	-	-
	Trme44268g00001	179	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	25	IPR013083	-
	Trme44268g00001	179	SUPERFAMILY	Clavaminate synthase-like	65	179	-	-
	Trme44268g00001	179	Pfam	JmjC domain, hydroxylase	153	179	IPR003347	-
	Trme44268g00001	179	SUPERFAMILY	FYVE/PHD zinc finger	1	31	IPR011011	-
	Trme44268g00001	179	Gene3D	Cupin	26	179	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme44268g00001	Trme-Chr44268	76	614	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme44268g00001	33	179	JUMONJI Transcription Factor Family	AT1G08620	41.818	3.43e-38	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Trme44268g00001		JmjC	4.1e-07	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme44268g00001	K11446		-	gmx:100789512	347.821