Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44233g00001 ATGGAATTGGGCATTCCAAGTAAGCAGCCCTCGAACTATTTTTGCAAGACTTTAACGGCCAGTGACACTAGCACACATGGAGGATTCTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTTCATGACGTTGAATGGAAGTTTCGTCATATTTTTCGGGAGTATGCTTATCTTTAG 231 0.4545 MELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFREYAYL 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44233g00001 76 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Trme44233g00001 76 Pfam B3 DNA binding domain 14 71 IPR003340 GO:0003677
Trme44233g00001 76 CDD B3_DNA 13 72 IPR003340 GO:0003677
Trme44233g00001 76 Gene3D - 12 75 IPR015300 -
Trme44233g00001 76 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 71 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44233g00001 Trme-Chr44233 580 968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44233g00001 1 71 B3 DNA Binding Superfamily AT5G37020 94.366 1.16e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme44233g00001 B3 1.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44233g00001 - - tpra:123913862 151.754