Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44142g00001 ATGTACATTTTTAGTATACATGATTTGTTTATTCTTTCACAGGAATTTAGTCAGGAACCTGTGATTCCTGTATATTCAGCAAGACCAGATATGGTTAAGAAGGCCTTGAAGTATGTACACTCTACTTCTCTAAACAAACTTGATGGGAAAGAGCTAGAGTTTCTCATCGCGATTCTTCCGGACAACAATGGCTCTCTCTATGGTGATCTCAAAAAAATATGCGAAACGGATTTAGGGCTGATTTCTCAATGCTGTCTTACAAAATATGTATTCAAGATTAATAGACATTATTTATCAAATGTAGCACTGAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTCTAAGTTGCAGGATTCCATTGGTTAGCGACATTCCAACAATAATTTTCGGAGCTGATGTAAGTCATCCAGAAGCCGGAGAGGATGTTTGTCCATCCCTTGCAGCCCCTCCCAAGACTGGCCAGAAGTGA 486 0.3951 MYIFSIHDLFILSQEFSQEPVIPVYSARPDMVKKALKYVHSTSLNKLDGKELEFLIAILPDNNGSLYGDLKKICETDLGLISQCCLTKYVFKINRHYLSNVALKINVKMGGRNTVLLDALSCRIPLVSDIPTIIFGADVSHPEAGEDVCPSLAAPPKTGQK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44142g00001 161 Pfam Piwi domain 55 154 IPR003165 GO:0003676
Trme44142g00001 161 SUPERFAMILY Ribonuclease H-like 45 150 IPR012337 -
Trme44142g00001 161 ProSiteProfiles Piwi domain profile. 54 154 IPR003165 GO:0003676
Trme44142g00001 161 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 154 - -
Trme44142g00001 161 Gene3D - 9 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44142g00001 Trme-Chr44142 4 929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44142g00001 15 154 Eukaryotic Initiation Factors Gene Family AT5G43810 79.286 4.99e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44142g00001 K11593 - gmx:100810235 255.373