Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44112g00001 ACTCTTGGCAACGGTAATATGAACACTGTCGAATCTCCCCGAGAGAGGCCCTTTTTTACCAGCAGCGAGGAGCGCCTACAAAAGCTCTCGAGATACAGGAACAAGAAGGCAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCACTAGCTGACAGTCAACCAAGAATCCGCGGAAGATTTGCAAAGAATGAAGAATCTGAGGCAAATAGGGAATAA 228 0.4605 TLGNGNMNTVESPRERPFFTSSEERLQKLSRYRNKKAKRNFGRKIKYACRKALADSQPRIRGRFAKNEESEANRE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44112g00001 75 ProSiteProfiles CCT domain profile. 25 67 IPR010402 GO:0005515
Trme44112g00001 75 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 69 IPR045281 GO:0009909
Trme44112g00001 75 Pfam CCT motif 25 67 IPR010402 GO:0005515
Trme44112g00001 75 MobiDBLite consensus disorder prediction 61 75 - -
Trme44112g00001 75 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44112g00001 Trme-Chr44112 244 637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44112g00001 21 71 C2C2-CO-like Transcription Factor Family AT5G57660 52.941 2.81e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme44112g00001 CCT 5.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44112g00001 - - gmx:100820570 123.25