Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44063g00001 ATGCCTCTACCACCAACTTGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTCGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACACTATTTGAAGGGCATCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAG 351 0.4274 MPLPPTCPMEFSAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQ 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44063g00001 117 PANTHER UBIQUITINATION FACTOR E4 1 117 IPR045132 GO:0000151|GO:0030433|GO:0034450
Trme44063g00001 117 Pfam Ubiquitin elongating factor core 1 117 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44063g00001 1 117 U-box Gene Family AT5G15400 88.136 5.05e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44063g00001 K10597 - gmx:100806175 229.565