Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44045g00001 ATGTTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGATAAGACTGATCATGTGCGTGTATTTGGAGCTCGGGGTGCTACTGGTTTTGAATTACCTGTTGGAAGCGAGGCATTTGAACAGTCGGGTCTGGATCTTGAGCGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTGAARAGAATTGAACGGGTACTTCCAGTTGGAACTTCCATGACCGCTGTTGGTGAG 240 0.4542 MLSMSKEVPWYLEDKTDHVRVFGARGATGFELPVGSEAFEQSGLDLERGTLDYLQGLKMLGVKRIERVLPVGTSMTAVGE 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44045g00001 80 Pfam E3 Ubiquitin ligase 2 80 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trme44045g00001 80 PANTHER - 1 80 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44045g00001 Trme-Chr44045 255 850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44045g00001 1 80 C3H Transcription Factor Family AT1G63900 76.250 9.45e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44045g00001 K15688 - gmx:100800734 134.806