Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4402g00001 ATGTATGGTAAGACTTTTCATGATTTTGTAGACAGAATCTCGATCGGGGAAACCTCTGAAGAGGAAGACAAGTTTCTGAGTTGGGTTGCAACGATCAGTAAAGCTACCACATATTCAGGACAAACTGAAGCCGTAAACATACCCATATACAGGAGCGAATATGATTTTATTGACAATGTAATAGTTGAACGTGTTACTCGTGTGCTAAACAACAAGAGAGACTTTTTTGGTGCTATCTATACAATGAGTGTAAAATCTAGCGTGCAAAATGTGATTCAACTGTTGAAACAATCAAAATCTCCTGTCCTACTAGGGATATGGGGGATAGCAGGGATCGGTAAATCAACCATTGCCCAAGCCCTTTATGATCAGATTGGTCCCTATTTTGTGCATAAGAGCTTTGTCAATGTCGCAGAAGTACGGGGAGAAAACAATGCTGACATTTTGTTACAAGGTGATCTTCTTTATGATATCAGCAAGACAACTAGAGTAAAGATAGATACAATTGAATTAGGAAAAGCGACATTAAAATTAAGACTTCGACGTAAAAGGGTACTTCTTATACTTGACAATGTTGATAAATTGGAGCAGCTAGATGCTTTGTGTGGAAGTCGTGAATGGTTTGACGAAGGTAGCAAAATAATCATCACCACAACAAATAGGCATCTACTCAAGGAACATAGAGTTGATCATATATATAGAGTGAAAGAACTGGACGAAAGTGAATCGCATGAGCTTTTTTATTGGGGTGAATTCAGCCAAGCAACAACTCCTCGAGAAGATTTTGGTGAGATTTCTGGTCAATTAGTTGCTTATTGTGGGGGATTGCCTCTTGCTCTTAAAGCCATTAGGACCTTTTTGCATGGAAAGGCAATAGTTGAATGGAAGGGTGTGTTGAGAAGTTTTCAAAGATTTTCCATTCCGGTACCACGACTATTCAAAGTTTTAAAAAAATGTTTTAATGATTTGAGTGATGAAGAGAAACAAATATTCCTTGATATAGCGTGCTTCTTCATCGGGATGGACCAAAATGATGTACTCCAGGCATTAAATAGGTCAACACAATCCACAACTCAAATAAGTCTCCTTGAAGACAAGAGCCTTGTAACCATTGATGAGAATAACAAGCTTCAAATGCATGTTCTGCTACAAGCCATGGCACGAGATATCATTAAGAGGGAATTGAGTAACAAGACTGATCAGCCCAAGTTGTACGATGTGTTCTTGAGTTTCAGAGGGGAAGACAGTCGTGCAAAGTTCATTTCACATCTCCATTCCTCTCTTCAAAATGCAGGAATTTATGTCTTCAAAGATGATGACGAGATTCAACGAGGAGATCAAATCTCAATCTCACTACTGCGAGCAATCGGACAGTCTAGAATTTCTATCGTTGTTTTGTCTACAAACTATGCTAATTCAAGATGGTGTTTGCTAGAGTTGGAGAAGATCATGGAAATTGGCAGAAGCAGGGGTCTGGTGGTTGTACCAATCTTCTATGAGGTAGATCCCTCAGAAGTACGGCATCAAAAAGGCCAGTTTGGAAAAGCTTTTGAAGATCTCATATCAAGAATCTCAGTGGATGAATCCACAAAGAGT 1596 0.3897 MYGKTFHDFVDRISIGETSEEEDKFLSWVATISKATTYSGQTEAVNIPIYRSEYDFIDNVIVERVTRVLNNKRDFFGAIYTMSVKSSVQNVIQLLKQSKSPVLLGIWGIAGIGKSTIAQALYDQIGPYFVHKSFVNVAEVRGENNADILLQGDLLYDISKTTRVKIDTIELGKATLKLRLRRKRVLLILDNVDKLEQLDALCGSREWFDEGSKIIITTTNRHLLKEHRVDHIYRVKELDESESHELFYWGEFSQATTPREDFGEISGQLVAYCGGLPLALKAIRTFLHGKAIVEWKGVLRSFQRFSIPVPRLFKVLKKCFNDLSDEEKQIFLDIACFFIGMDQNDVLQALNRSTQSTTQISLLEDKSLVTIDENNKLQMHVLLQAMARDIIKRELSNKTDQPKLYDVFLSFRGEDSRAKFISHLHSSLQNAGIYVFKDDDEIQRGDQISISLLRAIGQSRISIVVLSTNYANSRWCLLELEKIMEIGRSRGLVVVPIFYEVDPSEVRHQKGQFGKAFEDLISRISVDESTKS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4402g00001 532 Pfam NB-ARC domain 86 307 IPR002182 GO:0043531
Trme4402g00001 532 SUPERFAMILY "Winged helix" DNA-binding domain 312 394 IPR036390 -
Trme4402g00001 532 SUPERFAMILY Toll/Interleukin receptor TIR domain 396 519 IPR035897 -
Trme4402g00001 532 Gene3D - 237 324 IPR042197 -
Trme4402g00001 532 FunFam Disease resistance protein (TIR-NBS-LRR class) 401 531 - -
Trme4402g00001 532 Pfam TIR domain 405 520 IPR000157 GO:0007165
Trme4402g00001 532 Gene3D - 398 532 IPR035897 -
Trme4402g00001 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 334 IPR027417 -
Trme4402g00001 532 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 396 IPR044974 GO:0006952
Trme4402g00001 532 Gene3D - 70 232 IPR027417 -
Trme4402g00001 532 PRINTS Disease resistance protein signature 103 118 - -
Trme4402g00001 532 PRINTS Disease resistance protein signature 273 287 - -
Trme4402g00001 532 PRINTS Disease resistance protein signature 179 193 - -
Trme4402g00001 532 SMART AAA_5 100 239 IPR003593 GO:0016887
Trme4402g00001 532 SMART till_3 404 529 IPR000157 GO:0007165
Trme4402g00001 532 ProSiteProfiles TIR domain profile. 403 532 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4402g00001 Trme-Chr4402 1 1915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4402g00001 104 406 WRKY Transcription Factor Family AT5G45050 33.007 4.56e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4402g00001 - - mtr:11411578 691.804