Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme44015g00001 TATGTTGCTCCAGAATATGCCAATTCTGGCTTACTAAACGAGAAGAGTGATGTTTATAGCTATGGCGTATTGCTCCTTGAAGCAATTACTGGAAGAGACCCAGTGGATTATAACCGCTCAGCCGCTGAGGTAAATTTGGTCGATTGGCTGAAGATGATGGTAGGTAATAAGCACGCAGAAGAGGTGGTAGACCCAAACATTGAAACCAGACCATCAACAAGTGCACTTAAACGAGTCCTTTTGACTGCTTTGAGGTGTGTTGAT 264 0.4356 YVAPEYANSGLLNEKSDVYSYGVLLLEAITGRDPVDYNRSAAEVNLVDWLKMMVGNKHAEEVVDPNIETRPSTSALKRVLLTALRCVD 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme44015g00001 88 Gene3D Transferase(Phosphotransferase) domain 1 1 88 - -
Trme44015g00001 88 Pfam Protein tyrosine and serine/threonine kinase 1 47 IPR001245 GO:0004672|GO:0006468
Trme44015g00001 88 ProSiteProfiles Protein kinase domain profile. 1 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme44015g00001 88 PANTHER OS01G0323000 PROTEIN 1 88 - -
Trme44015g00001 88 SUPERFAMILY Protein kinase-like (PK-like) 1 87 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme44015g00001 Trme-Chr44015 504 1010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme44015g00001 1 87 Trihelix Transcription Factor Family AT5G38560 45.055 5.93e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme44015g00001 PK_Tyr_Ser-Thr 2.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme44015g00001 - - gmx:100785337 167.162