Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43972g00001 ATGTTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGATAAGACTGATCATGTGCGTGTATTTGGAGCTCGGGGTGCTACTGGTTTTGAATTACCTGTTGGAAGCGAGGCATTTGAACAGTCAGGTCTGGATCTTGACCATGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTGAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCATGACCGCTGTTGGTGAGGTAATCTCATTAGTTTCAGAGATATCGCTTGTTACTTTCTGA 282 0.4326 MLSMSKEVPWYLEDKTDHVRVFGARGATGFELPVGSEAFEQSGLDLDHGTLDYLQGLKMLGVKRIERVLPVGTSMTAVGEVISLVSEISLVTF 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43972g00001 93 PANTHER - 1 82 IPR044231 GO:0004842|GO:0016567
Trme43972g00001 93 Pfam E3 Ubiquitin ligase 2 82 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43972g00001 Trme-Chr43972 161 799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43972g00001 1 82 C3H Transcription Factor Family AT1G63900 73.171 4.35e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43972g00001 K15688 - gmx:100800734 132.494