Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme439712g00001 GGCAACGGCGGCGCACTTCGTTACCGTGGAGTACGCCGTCGACCATGGGGTCGTTACGCAGCTGAAATAAGAGACCCAGCGTCAAAAGAACGCCGCTGGCTCGGCACCTTCGACACAGCTGAAGAAGCCGCTTGTGCTTACGACTGCGCCGCACGTGCCATGCGTGGTATCAAAGCTCGCACGAATTTCGTTTACCCAACTCCTCCAACACCTCATACCACCACTTTCCCTTCTTTCAACTTCCCTAAACATTCTCAAACTAACCGCCACGTGTCAACTTGTAGTTG 287 0.5436 GNGGALRYRGVRRRPWGRYAAEIRDPASKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTPPTPHTTTFPSFNFPKHSQTNRHVSTCS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme439712g00001 95 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Trme439712g00001 95 MobiDBLite consensus disorder prediction 63 95 - -
Trme439712g00001 95 CDD AP2 7 63 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 80 - -
Trme439712g00001 95 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Trme439712g00001 95 FunFam Ethylene-responsive transcription factor 2 7 65 - -
Trme439712g00001 95 MobiDBLite consensus disorder prediction 76 95 - -
Trme439712g00001 95 SUPERFAMILY DNA-binding domain 7 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme439712g00001 Trme-Chr439712 9 295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme439712g00001 6 68 AP2-EREBP Transcription Factor Family AT1G24590 93.651 1.80e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme439712g00001 AP2 8.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme439712g00001 - - psat:127121366 143.28