Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4395g00001 GGCTATGGGAAGGTTTATAAAGGTATTCTTTCTAATGGCACTGTAGTTGCCATAAAACGTGCACAGCAAGGATCACTGCAAGGTGAGAAAGAATTTCTTACAGAAATATCAATACTATCAAGGATACATCACCGCAACCTTGTGTCTCTGGTTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGGGACCACCTTTCTGTTACATCAGAAAAGCCTTTGACTTTTGCTATGAGATTGAAGATAGCATTAGAGTCAGCTAAAGGTCTTGTGTATCTACACACAGAAGCCGAACCTCCAATATTTCACCGAGATGTTAAGTCAAGCAACATATTATTGGACTCTAAGTTCACTGCAAAAGTGGCAGATTTTGGACTTTCACGGCTTGCACCAGTTCCTGATGTTCATGGTATTATACCCGGCCATGTATCCACAGCGGTAGTGGGGACCCCGGGTTACCTTGATCCAGAATACTTCTTAACTCATGCGTTCACCAACAAGAGTGATGTTTATAGTCTTGGTGTTGTGTTTTTGGAACTTTTGACTGGGATGCATGCTATCTCACATGGCAAAAATATTGTTAGAGAG 618 0.4126 GYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRIHHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKGLVYLHTEAEPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDVHGIIPGHVSTAVVGTPGYLDPEYFLTHAFTNKSDVYSLGVVFLELLTGMHAISHGKNIVRE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4395g00001 206 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4395g00001 206 FunFam receptor-like protein kinase FERONIA 1 66 - -
Trme4395g00001 206 PANTHER OS01G0750732 PROTEIN 1 202 - -
Trme4395g00001 206 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Trme4395g00001 206 SMART serkin_6 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4395g00001 206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Trme4395g00001 206 Pfam Protein kinase domain 2 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4395g00001 206 SUPERFAMILY Protein kinase-like (PK-like) 1 199 IPR011009 -
Trme4395g00001 206 Gene3D Transferase(Phosphotransferase) domain 1 68 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4395g00001 Trme-Chr4395 356 2231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4395g00001 1 206 Receptor kinase-like Gene Family AT5G01950 75.728 1.42e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme4395g00001 Pkinase 6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4395g00001 - - vvo:131623420 382.489