Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43952g00001 ATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGAAAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAACTGAAAGAAAAACATGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAAAACTTGGATGATAGTGTCAGTGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCAACAGGGAATTAGTAGGGGATCTGGATTTGTTGCTTTTTCAACTCCCGAGGAAGCAACTCGAGCTCTTGCTGCGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTATGTTGCTCCCGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAG 474 0.3987 MRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDEKEWYVGKALKKYERELELKEKHEQSMKETVDKFYGANLYLKNLDDSVSDEKLSELFSEFGTVTSCKILRDQQGISRGSGFVAFSTPEEATRALAAMNGKMVAGKPLYVAPAQKKEERKARLQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43952g00001 158 SMART rrm1_1 73 145 IPR000504 GO:0003723
Trme43952g00001 158 PANTHER RNA BINDING PROTEIN 1 157 - -
Trme43952g00001 158 SUPERFAMILY RNA-binding domain, RBD 1 50 IPR035979 GO:0003676
Trme43952g00001 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Trme43952g00001 158 Coils Coil 45 65 - -
Trme43952g00001 158 SUPERFAMILY RNA-binding domain, RBD 72 155 IPR035979 GO:0003676
Trme43952g00001 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Trme43952g00001 158 SMART rrm2_1 73 145 IPR003954 GO:0003676
Trme43952g00001 158 FunFam Polyadenylate-binding protein 55 158 - -
Trme43952g00001 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 39 IPR000504 GO:0003723
Trme43952g00001 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
Trme43952g00001 158 Gene3D - 1 52 IPR012677 -
Trme43952g00001 158 Gene3D - 53 157 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43952g00001 Trme-Chr43952 326 973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43952g00001 1 60 Eukaryotic Initiation Factors Gene Family AT1G49760 36.667 4.00e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43952g00001 K13126 - lja:Lj1g3v1664440.1 246.514