Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4394g00001 ATGATCACTTGTCCAATTTATGCTACTGATTCCGAGGACAGTGTACTCACAATGGACCTTGTATCGTGTACCAAGATGTTTGAAGTCAATGCTACTATAAATGCAAATCGCCTGTCGATGAATTTCCTCATGTTGAGTTGGCCAAAACCAAATTGTGCCATTTGTGAAGCAAAAGGCATGAAATGTAGATGGAACAATAACAGCACCAAAGGTGACATTGAATGCTATGACTGCAACGACAAACACAAAACTATCCATATTCCAAAATCTCTCATTTTCTCTGCTATAGGTTCGATTATATTGGGGTTGGTCATCATTGCAATTACTAAGATTTATCTACATTTCAAGGGAAAAAAAGAAGATCAAGTTAGAATTGACAAGTTTTTAGAGGATTATAAAGCACAAAAGCCTGCCAGATTTTCTTATGCTGATATAAAAAGAATCACGGATGGGTTTAAGGAAAAGCTAGGAGAAGGAGCTCATGGAACAGTGTTTAAAGGAAAACTCTCTAGTGAGATTCTAGTGGCTGTGAAGGTGCTCAATAATACACAAGGTGATGGGAAAGAGTTCATCACTGAAGTGGAAATTATGGGCAAAATCCACCACATCAATGTTGTTCGTTTGCTTGGCTTTTGCGCAGATGGAATCCACCGGGCTCTTGTATACAATTTGTTTCCAAAAGGTTCGCTACAAAGCTTCATATTTCCACCGGATAACAAGGACCATTTTATGGGGTGGGAAAAGCTGCAACAAATTAGTCTTGGTATAGCAAAAGGAATCGAGTATCTTCATGAGGGTTGTAGTCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACAGCTTTACTCCAAAAATTTCAGATTTTGGTCTCGCCAAATTATGTGCCAAGAATGTTAGTATGGTGTCCATGACAGCTGCTAGGGGAACGATGGGATATATGGCGCCTGAAGTACTATCCCGAAATTTTGGAAATGTTTCTCTTAAATCTGATATTTATAGTTATG 1021 0.3869 MITCPIYATDSEDSVLTMDLVSCTKMFEVNATINANRLSMNFLMLSWPKPNCAICEAKGMKCRWNNNSTKGDIECYDCNDKHKTIHIPKSLIFSAIGSIILGLVIIAITKIYLHFKGKKEDQVRIDKFLEDYKAQKPARFSYADIKRITDGFKEKLGEGAHGTVFKGKLSSEILVAVKVLNNTQGDGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFPKGSLQSFIFPPDNKDHFMGWEKLQQISLGIAKGIEYLHEGCSHPILHFDINPHNVLLDDSFTPKISDFGLAKLCAKNVSMVSMTAARGTMGYMAPEVLSRNFGNVSLKSDIYSY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4394g00001 340 Gene3D Transferase(Phosphotransferase) domain 1 225 340 - -
Trme4394g00001 340 FunFam Os07g0541700 protein 225 315 - -
Trme4394g00001 340 ProSiteProfiles Protein kinase domain profile. 150 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4394g00001 340 Gene3D Phosphorylase Kinase; domain 1 124 224 - -
Trme4394g00001 340 FunFam serine/threonine-protein kinase PBS1-like 118 224 - -
Trme4394g00001 340 Pfam Protein tyrosine and serine/threonine kinase 152 340 IPR001245 GO:0004672|GO:0006468
Trme4394g00001 340 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Trme4394g00001 340 SUPERFAMILY Protein kinase-like (PK-like) 134 340 IPR011009 -
Trme4394g00001 340 PANTHER RUST RESISTANCE KINASE LR10-RELATED 122 340 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4394g00001 Trme-Chr4394 39 1173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4394g00001 115 340 Receptor kinase-like Gene Family AT1G66980 51.542 4.81e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme4394g00001 PK_Tyr_Ser-Thr 4.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4394g00001 - - gmx:100811907 539.265