Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43920g00001 ATGCCTACATTAGCCATGCTTGATCTTTCCAACAATTCGTTGACCGGTCATATACCTGAAAACTTTGGTTCATCACCAGCTCTTGAAGCATTTAATGTCTCATACAACAAGCTTGAAGGTTCTGTACCAGAAAATGGTATGCTGAGAACTATAAACCCTAATAATCTCGTCGGAAATGATGGCCTATGTGGTGGTATCCTCCCTTCTTGTGATCAAAACTCAGCATACTCCTCAAGGCATGGAAGTTCTCATGAAAAGCACATTATTACAGGATGGATTATTGGAATATCATCAATTCTAGCCATTGGAATTACAATTTTRGTAGCAAGATCTTTATATGTAAGGTGGTACACCGGCGGTTTTTGCTTCAGAGAGAGATTTTATAAAGGTAGCAAAGGGTGGCCATGGAGATTGATGGCATTTCAGAGACTTGATTTTACAAGTTCAGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGAATGGGAGGTACCGGCGTTGTTTACAAGGCCGAGGTACCGCATTCTAACACAGTTGTAGCAGTGAAAAAGTTGTGGAGATCAGGAAATGATGTTGAATTAGGAGGAGGAGTAGGAGGCAGTGATGAGCTTGTTGGAGAGGTCAACTTTTTAGGGAGATTAAGGCATAGAAACATTGTTAGATTATTAGGATTTCTTCATAATGACACTGATTTGATGATAGTTTATGAATTTATGCCTAATGGAAACCTTGGAGATGCCTTGCATGGTAGACAAGCAGTTAGACAGCTTGTGGATTGGGTTTCAAGATATAACATAGCTCTAGGAGTTGCTCAAGGACTTGCTTATCTTCACCATGACT 844 0.3993 MPTLAMLDLSNNSLTGHIPENFGSSPALEAFNVSYNKLEGSVPENGMLRTINPNNLVGNDGLCGGILPSCDQNSAYSSRHGSSHEKHIITGWIIGISSILAIGITILVARSLYVRWYTGGFCFRERFYKGSKGWPWRLMAFQRLDFTSSDILACIKETNVIGMGGTGVVYKAEVPHSNTVVAVKKLWRSGNDVELGGGVGGSDELVGEVNFLGRLRHRNIVRLLGFLHNDTDLMIVYEFMPNGNLGDALHGRQAVRQLVDWVSRYNIALGVAQGLAYLHHD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43920g00001 281 Gene3D Transferase(Phosphotransferase) domain 1 140 281 - -
Trme43920g00001 281 FunFam MDIS1-interacting receptor like kinase 1 155 243 - -
Trme43920g00001 281 ProSitePatterns Protein kinases ATP-binding region signature. 161 185 IPR017441 GO:0005524
Trme43920g00001 281 PANTHER LEUCINE RICH REPEAT KINASE 2 3 281 - -
Trme43920g00001 281 ProSiteProfiles Protein kinase domain profile. 155 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43920g00001 281 Gene3D Ribonuclease Inhibitor 1 78 IPR032675 -
Trme43920g00001 281 Pfam Protein kinase domain 157 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43920g00001 281 SUPERFAMILY L domain-like 1 64 - -
Trme43920g00001 281 SUPERFAMILY Protein kinase-like (PK-like) 151 279 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43920g00001 Trme-Chr43920 10 853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43920g00001 1 281 Receptor kinase-like Gene Family AT1G08590 52.234 1.64e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme43920g00001 Pkinase 4.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43920g00001 - - tpra:123885500 515.768