Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43871g00001 GTACTTGGAGATGGATTCTTGGGCAGAGACATGGGATTCAGAAACACAGCCGGTGCCATCAAGCATCAAGCCGTGGCCGCCAGAATCCAAGCAGATCAAGCCATATTTGTCAACTGCAACTTCGAAGGTTATCAAGACACATTGTACGCACAAACACACAGACAATTCTACCGCGACTGTATCATTTCTGGCACAATCGATTTCATCTTTGGTGACGCATCCGCAGTCTTCCAAAACTGCCAAATGGTTATTAGAAAGCCACTCGACAACCAACAAAACATCGTCACAGCACAAGGAAGACTTGACAAACAAGAAACCACCGCATTCGTCCTACAAAAATGTGTCTTCAAGGGCGAAGATGGCCTTCCCCCAACAACCAAGAATTACCTCGGAAGACCATGGAAGGAATATTCAAGGACAATTATCATGGAATCCGACATTGGCGGTTTGATTCATCCCGACGGTTGGTTACCTTGGGAAGGTGATTTTGCATTAACCACATTGTATTATGGTGAGTTTAAMAATGTTGGTGCTGGTGCTAATACTAATGCAAGAGTTAAATGGATTGGACGCAAAGATATAAACCGGGATGAGGCTATTACTTATACCGTTGAACCTTTCTTGCAAGGAACAATATGGATCAATGGTACAGGTGTTCCAGCTCAATTAGGCTTGTACAATTAA 684 0.4357 VLGDGFLGRDMGFRNTAGAIKHQAVAARIQADQAIFVNCNFEGYQDTLYAQTHRQFYRDCIISGTIDFIFGDASAVFQNCQMVIRKPLDNQQNIVTAQGRLDKQETTAFVLQKCVFKGEDGLPPTTKNYLGRPWKEYSRTIIMESDIGGLIHPDGWLPWEGDFALTTLYYGEFXNVGAGANTNARVKWIGRKDINRDEAITYTVEPFLQGTIWINGTGVPAQLGLYN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43871g00001 227 Gene3D - 1 225 IPR012334 -
Trme43871g00001 227 SUPERFAMILY Pectin lyase-like 1 222 IPR011050 -
Trme43871g00001 227 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme43871g00001 227 Pfam Pectinesterase 2 210 IPR000070 GO:0030599|GO:0042545
Trme43871g00001 227 FunFam Pectinesterase 4 1 225 - -
Trme43871g00001 227 PANTHER PECTINESTERASE 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43871g00001 Trme-Chr43871 93 776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43871g00001 3 227 Carbohydrate Esterase AT2G26450 60.699 1.79e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43871g00001 - - gmx:100807628 379.793