Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43869g00001 ATGATTGTCAGTCAAGCTTATGCAAATATGAAGAAACAGCAAGTTTTGCACGTTCCTCCACGTATGGCTCAGTGTGTGCTAAGGGACAGCGAAAGCATTGTCCTTAGAACTAGGCACAATATGGATAGAACTACTTGCACTATCAGGACTTATATTAGGGAAGACAAGCCAGAAAAGAAAGAGATGTACTTGACCGATGGTTGGTTTGAATTCAAAAAAGCTAACCAGCTTCGAAAGGGGGACAAGCTTCAGTTTCAACTTTCTGATCCTCCGGATGTCGTAGTTGTTGATATTGTTCGTCGCCGTGGTTTGAAAATCAATTAG 324 0.4167 MIVSQAYANMKKQQVLHVPPRMAQCVLRDSESIVLRTRHNMDRTTCTIRTYIREDKPEKKEMYLTDGWFEFKKANQLRKGDKLQFQLSDPPDVVVVDIVRRRGLKIN 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43869g00001 107 Gene3D - 2 102 IPR015300 -
Trme43869g00001 107 Pfam B3 DNA binding domain 9 101 IPR003340 GO:0003677
Trme43869g00001 107 SUPERFAMILY DNA-binding pseudobarrel domain 9 104 IPR015300 -
Trme43869g00001 107 ProSiteProfiles B3 DNA-binding domain profile. 1 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43869g00001 Trme-Chr43869 467 871 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme43869g00001 B3 3.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43869g00001 - K19921 tpra:123909626 112.849