Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43824g00001 ATGAAGGTCAAAGCTGATAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCACAAGATGTCGCTACAAGATGCAAGGAGCTAGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACTGGAGGAAACAAGACAAAAACACCAGGCCCTGGTGCTCAGGCTGCTCTCCGTGCTTTGGCACGTTCAGGAATGAAAATT 201 0.4726 MKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKI 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43824g00001 67 Gene3D Ribosomal protein S11 1 67 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trme43824g00001 67 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 67 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme43824g00001 67 Pfam Ribosomal protein S11 1 67 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme43824g00001 67 FunFam 40S ribosomal protein S14 1 67 - -
Trme43824g00001 67 SUPERFAMILY Translational machinery components 3 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43824g00001 Trme-Chr43824 642 1012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43824g00001 1 67 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 94.030 4.65e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43824g00001 K02955 - cit:112495483 124.405