Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43796g00001 ATGGAGTTCATATGGTGTCCTGGTGATGAGGTCTTTTCAGGTTCCACATGTAAGCATGGAGAGATTGAAGCCGTAGTGATAGCAACAGGGGTTCATTCCTTTTTTAGAAAAGCAGCACACTTGGTTGACAGCACCGAAGTTGTCGGACACTTTCAGAAGGAAAACACAGCAGCAGTTCCTGTGCCTAGAGCGCAGACACCAGTGTGTGTCCCCTGCTCCTGCTCTTAA 228 0.4825 MEFIWCPGDEVFSGSTCKHGEIEAVVIATGVHSFFRKAAHLVDSTEVVGHFQKENTAAVPVPRAQTPVCVPCSCS 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43796g00001 75 Pfam E1-E2 ATPase 7 53 - -
Trme43796g00001 75 SUPERFAMILY Calcium ATPase, transduction domain A 7 42 IPR008250 -
Trme43796g00001 75 Gene3D - 7 29 - -
Trme43796g00001 75 Gene3D - 30 47 - -
Trme43796g00001 75 PANTHER CALCIUM-TRANSPORTING ATPASE 7 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43796g00001 Trme-Chr43796 119 955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43796g00001 7 53 Primary Pumps ATPases AT3G42640 89.362 4.27e-24 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43796g00001 K01535 - msin:131251827 95.1301