Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme437902g00001 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTTCGTAAAGGTCTTTGGTCTCCTGAAGAAGATGAAAAGCTTTTGAATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCAAAACTAGCTG 133 0.3985 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA 44
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme437902g00001 44 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 44 IPR017930 -
Trme437902g00001 44 Gene3D - 11 44 - -
Trme437902g00001 44 ProSiteProfiles Myb-like domain profile. 9 44 IPR001005 -
Trme437902g00001 44 SUPERFAMILY Homeodomain-like 7 43 IPR009057 -
Trme437902g00001 44 CDD SANT 17 42 IPR001005 -
Trme437902g00001 44 Pfam Myb-like DNA-binding domain 14 42 IPR001005 -
Trme437902g00001 44 PANTHER MYB DOMAIN PROTEIN 55 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme437902g00001 Trme-Chr437902 62 194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme437902g00001 1 44 MYB Transcription Factor Family AT1G57560 97.727 6.27e-27 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme437902g00001 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme437902g00001 K09422 - gmx:100788976 102.834