Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme437101g00001 GTGACACCGAGTGACGTAGGAAAGCTGAATCGACTTGTGATTCCAAAGCAGTACGCAGAGAAGTACTTCCCATTGGATTCATCTAACGACAAAGGGATTCTTCTCAATTTTGAAGATCGGAATGGGAAAATGTGGCGGTTCAGATATTCTTATTGGAACAGTAGCCAGAGCTATGTTATGACAAAAGGATGGAGCCGTTTCGTTAAGGATAAGAAGCTTGATGCCGGTGACATTGTTTCATTTCACCGTGGCCGTCATGAATCCTACAGACACAG 275 0.44 VTPSDVGKLNRLVIPKQYAEKYFPLDSSNDKGILLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRGRHESYRH 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme437101g00001 91 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 84 IPR044800 GO:0003700
Trme437101g00001 91 SMART B3_2 1 90 IPR003340 GO:0003677
Trme437101g00001 91 Gene3D - 1 91 IPR015300 -
Trme437101g00001 91 CDD B3_DNA 1 88 IPR003340 GO:0003677
Trme437101g00001 91 SUPERFAMILY DNA-binding pseudobarrel domain 1 87 IPR015300 -
Trme437101g00001 91 Pfam B3 DNA binding domain 2 86 IPR003340 GO:0003677
Trme437101g00001 91 ProSiteProfiles B3 DNA-binding domain profile. 1 91 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme437101g00001 Trme-Chr437101 22 296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme437101g00001 1 84 B3 DNA Binding Superfamily AT1G01030 89.412 9.51e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme437101g00001 B3 6.6e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme437101g00001 K09287 - tpra:123889518 195.667