Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43691g00001 ACAAGTTCTTCATTTGATGGTGATAGGAGCAAAGGCATGTCAGATAGGTTTGCTGATTCGACAAGGGTTTCCGGTGATTCGAATTATGGTTCGGAGGCTAAATTGTCAGGGTTGTTTCCAAGAGTTTCACAAGAGTTGAAGGAAGCATTGGCTACACTTCAACAAACATTTGTTGTCTCTGATGCAACTAAACCTGATTGTCCTATCTTGTATGCTAGCAGCGGTTTTTTTACTATGACCGGTTACTCTTCCAAAGAGGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCTAAAATTCGTGATGCAACGAAGAATGGGAGGAGTTACTGCGGCAGACTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTCACTGTCACTCCAATCAAAGATGATCGTGGCAATACCATCAAATTCATTGGGTCGGTCCTACTTTTCCTATGGTGTATTAGTAGTTTAGAACTCAAAGCATAA 510 0.402 TSSSFDGDRSKGMSDRFADSTRVSGDSNYGSEAKLSGLFPRVSQELKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTIKFIGSVLLFLWCISSLELKA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43691g00001 169 Pfam PAS domain 63 153 IPR000014 -
Trme43691g00001 169 Gene3D PAS domain 56 156 - -
Trme43691g00001 169 NCBIfam PAS domain S-box protein 68 155 IPR000014 -
Trme43691g00001 169 CDD PAS 69 155 IPR000014 -
Trme43691g00001 169 PANTHER PROTEIN TWIN LOV 1 39 153 - -
Trme43691g00001 169 SUPERFAMILY PYP-like sensor domain (PAS domain) 63 155 IPR035965 -
Trme43691g00001 169 MobiDBLite consensus disorder prediction 1 29 - -
Trme43691g00001 169 ProSiteProfiles PAS repeat profile. 42 115 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43691g00001 Trme-Chr43691 1 944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43691g00001 45 156 AGC Kinase Gene Family AT5G58140 47.321 2.14e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43691g00001 K20715 - gmx:100804783 278.485