Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4365g00001 ATGACGAGGAAACAAGTGAAGGAAGTAAAAAAAAATGATGATATTTTAGATAAAAAATTGCCTTATGATGGTGAAAATCCTAGGGCTGGGATGACATTTAGCTCTGAAGATGAAGCTACCGACTATTACATGAATTATGCTCGTTGTATGGGTTTTGGATTTCGTAAAATCAGTTCAAAAAATGGAGATGATGGAAAAAGATATTTTACTTTAGGATGTAGTCGAGCAAGAAAGTATGTGAGCAATTCAAAGAATCTTTTGAAGCCAAATCCTATTACAAAAACACAATGTAAGGCTAGATTGAATGCCTGTATGTCTTTAGAAGGAACAGTTACAATTTCAAGTGTTATTCTTGAGCATAATCATGAATTAAGCCCAACAAAAGCACGGTATTTTAGATGCAATAAGAATTTGGGGCCTTATATGAAAAGGAGATTGGAACTTAATGATCAAGCTGGAATTAACGTAAGCAGAAACTTTCGATCATTGGTTGTTGAAGCTGACGGTTATGAGAATCTTAGTTTTGGAGAAAGAGATTGTAGGAATTATATAGATAAAGTACGACGGCTACGACTTGGAACAGGGGATGCTGATGCTATTCAAAACTATTTTGTTAGGATGCAAAAACAAAATAGTCAATTTTATTATGTAATGGATCTGGATGATGAAAGTCGTTTACAGAATGTGTTTTGGGCAGATGCGAGATCTAGAGCTGCATATGAATATTTTGGTGAAGTCATAACATTTGACACCACTTATTTGACAAACAAATATGACATGCCTTTTGCCCCTTTTGTTGGGGTGAATCATCATGGTCAGTCTATTCTATTAGGTTGTGCTTTGTTGTCGAATGAGGATACTGAAACTTTTACTTGGTTGTTCAAAACATGGTTGGAATGTATGCAAGGACGTGCACCAAATGCCATAATTACTGATCAAGATAGAGCAATGAAGAATTCAATTGAGGTTGTCTTTCCGAAAGCTCGTCATCGATGGTGTTTGTGGCATATAATGAAAAAGGTTCCRGAAAAGTTAGGTAGACACTCTGATTATGAGTCTATCAAAACACTCTTGCATGACATTGTATATGATTCTTGGAGTAAAAGTGATTTTGTAGAGAAGTGGGAAAAAATGGTGGGATATTATGACTTCAAGATAATGAATGGTTGA 1170 0.3521 MTRKQVKEVKKNDDILDKKLPYDGENPRAGMTFSSEDEATDYYMNYARCMGFGFRKISSKNGDDGKRYFTLGCSRARKYVSNSKNLLKPNPITKTQCKARLNACMSLEGTVTISSVILEHNHELSPTKARYFRCNKNLGPYMKRRLELNDQAGINVSRNFRSLVVEADGYENLSFGERDCRNYIDKVRRLRLGTGDADAIQNYFVRMQKQNSQFYYVMDLDDESRLQNVFWADARSRAAYEYFGEVITFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCALLSNEDTETFTWLFKTWLECMQGRAPNAIITDQDRAMKNSIEVVFPKARHRWCLWHIMKKVPEKLGRHSDYESIKTLLHDIVYDSWSKSDFVEKWEKMVGYYDFKIMNG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4365g00001 389 Pfam FAR1 DNA-binding domain 41 125 IPR004330 -
Trme4365g00001 389 PANTHER OS01G0519700 PROTEIN 25 385 - -
Trme4365g00001 389 Pfam MULE transposase domain 246 340 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4365g00001 Trme-Chr4365 299 1468 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme4365g00001 MULE 8.1e-37 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4365g00001 - - tpra:123899783 655.595