Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43644g00001 TTTCTGGCACGCGATATAGCTTTTGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCTTTAAGAGTGAATGCAGACTTAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCATTCCTTTAGACAATTCTATAGAGAATGTGACATTTTTGGGACCATAGATTTCATATTTGGTAATGCAGCAGTAGTTTTACAAGCATGTAACATTGTTTCAAGAATGCCATTACCTAATCAATTCACTGTCATTACTGCACAATCCAGAGATTCTCCTGATGAAGACACTGGCATCTCAATCCAAAATTGTTCAATTTTAGCTACTACTGATTTGTATGAAAACTCTAACAACATTAAAAGTTACCTTGGAAGACCTTGGAGGGTTTATTCTAGGACTGTTTATATTGAGTCTTACATTGATGTGTTTATTGATCCAATGGGATGGACAAAGTGGTCTCATGATGGTGATAAAGGGTTGGATACTTTGTATTATGGTGAGTATGCAAATTATGGACCTGGTTCTGGAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNTACTTCATTCCCTTATGATGATTGGATTTGA 678 0.3097 FLARDIAFENKAGPEKHQAVALRVNADLTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVLQACNIVSRMPLPNQFTVITAQSRDSPDEDTGISIQNCSILATTDLYENSNNIKSYLGRPWRVYSRTVYIESYIDVFIDPMGWTKWSHDGDKGLDTLYYGEYANYGPGSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFPYDDWI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43644g00001 225 ProSitePatterns Pectinesterase signature 2. 57 66 IPR033131 -
Trme43644g00001 225 Pfam Pectinesterase 1 183 IPR000070 GO:0030599|GO:0042545
Trme43644g00001 225 Gene3D - 1 192 IPR012334 -
Trme43644g00001 225 PANTHER PECTINESTERASE 1 183 - -
Trme43644g00001 225 SUPERFAMILY Pectin lyase-like 1 183 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43644g00001 Trme-Chr43644 66 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43644g00001 1 182 Carbohydrate Esterase AT2G26440 74.176 1.36e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43644g00001 - K01051 gmx:102666380 341.658