Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4363g00001 ATGTTGTCATTTGCAGCAACAGACCCTACACTCTCATCGTTGCAATTCCCTTTCTTTGTCAGGACGACACTCAGCGATTCGTACCAAATGACTGCTGTTTCAGAAATAATTGATTTCTATGGATGGAAGGAAGTTATTGCTATTTATGTAGATGATGATTATGGACGAAACGGTGTGTCTGCTTTAGATGATGCGTTAGCAAGGAGGCGTTGTAGAATTTCCTATAAGGCAGGAATCAAATCAGGACCTGATGTTGATAGAAATGAAATCACCAATTTGCTTGTGAGTGTCGCAATGATGCAGTCTAGGGTTATTGTTGTTCATACACATTCTAATTCTGGATTTATGATCTTCAAAGTTGCACGATATCTTGGGATGATGCAGGAGGGTTATGTCTGGATAGCCACAGATTGGCTTTCCACTGTTATAGATTCCGGGTCTCTTCATTCGGAGACAATGGATACTCTGCAGGGTGCTCTTGTTTTGCGCCAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTATCCAGGTGGAACAAGTTAACCGGTGGTTCCTTGGGGTTAAATTCTTATGGCCTCCATGCTTATGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTCAGTCAGGGTGGGGTTGTTTCATGTACGAATTACACGAGTTTGCATGATGATAATGGAAAGGGAGGTGGTCTTAACCTTGATGCCATGAGCATATTTGACAATGGAACACTTCTGTTGAAAAACATATTGCAGAGTGATTTTGTTGGATTATCAGGTCCATTGAAATTTGATTCAGAAAAATCTCCTTATCGTCCTGCCTATGACATCATTAATGTTGTTGGAAATGGTGTTCGTCGAGTTGGCTACTGGTCTAACTATTCTGGTCTGTCAATTGTATCTCCTGAGACGTTGTATGCTAACCCACCTAATAGATCAAGTGCAAACCAGCACCTTCACACTGTGATATGGCCTGGAGAAACATTATCAAGGCCCCGTGGATGGGTCTTCCCAAACAATGGCAAACAATTGAGAATTGGTGTGCCTATTAGAGCCAGTTTCCGTGAATTTGTCTCACCGGTGAAGGGAACTGATAATTTTAAAGGGTTTTGCATTGATGTATTTATAGCAGCTGTAAACTTGTTACCATATGCCGTTCCTTATCGATTTGTGCCATTCGGAGATGGCCTAAAAAATCCAAGCTACACAGGACTTGTCAACTTAATAACCGCTGGTGTTTTGGATGGTGCTGTTGGTGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTTGCCCCTTTTAAGAAGATCAATTCCGGTGGTTGGTCTTTCCTGCAGCCGTTCACTGCTTTTATGTGGATTGTGACTGCTTGTTTCTTCTTTTTTGTCGGGATAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAAACAACAAATTATAACCATATTATGGTTTAGCCTGTCGACTCTATTTTTTTCCCACAGAGAGAATACAATGAGTACTCTTGGGCGTGGTGTGGTACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCAAGCTACACTGCAAGTTTAACATCCATACTCACGGTGCAGCAGTTATCTTCATCTATCACTGGAATAGATAGTTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTTGGTTCATTTGCGGAACGTTACTTGACTGAAGATCTTGGAATATCCAAATCTAGACTGATTCCCCTTGGTTCGCCAGAAGAATATGCCAAGTCACTCCAGCTTG 1840 0.4136 MLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVSEIIDFYGWKEVIAIYVDDDYGRNGVSALDDALARRRCRISYKAGIKSGPDVDRNEITNLLVSVAMMQSRVIVVHTHSNSGFMIFKVARYLGMMQEGYVWIATDWLSTVIDSGSLHSETMDTLQGALVLRQHTPDTDRKKAFLSRWNKLTGGSLGLNSYGLHAYDSVWLVAQAIDKFFSQGGVVSCTNYTSLHDDNGKGGGLNLDAMSIFDNGTLLLKNILQSDFVGLSGPLKFDSEKSPYRPAYDIINVVGNGVRRVGYWSNYSGLSIVSPETLYANPPNRSSANQHLHTVIWPGETLSRPRGWVFPNNGKQLRIGVPIRASFREFVSPVKGTDNFKGFCIDVFIAAVNLLPYAVPYRFVPFGDGLKNPSYTGLVNLITAGVLDGAVGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTAFMWIVTACFFFFVGIVVWILEHRINDEFRGPPKQQIITILWFSLSTLFFSHRENTMSTLGRGVVLIWLFVVLIINSSYTASLTSILTVQQLSSSITGIDSLKASDEPIGFQVGSFAERYLTEDLGISKSRLIPLGSPEEYAKSLQL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4363g00001 613 Gene3D - 26 186 - -
Trme4363g00001 613 SMART GluR_14 348 560 IPR001320 GO:0015276|GO:0016020
Trme4363g00001 613 FunFam Glutamate receptor 342 457 - -
Trme4363g00001 613 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 612 IPR015683 -
Trme4363g00001 613 FunFam Glutamate receptor 458 588 - -
Trme4363g00001 613 FunFam Glutamate receptor 25 178 - -
Trme4363g00001 613 Pfam Ligand-gated ion channel 469 571 IPR001320 GO:0015276|GO:0016020
Trme4363g00001 613 SUPERFAMILY Periplasmic binding protein-like II 323 611 - -
Trme4363g00001 613 SUPERFAMILY Periplasmic binding protein-like I 1 339 IPR028082 -
Trme4363g00001 613 Gene3D - 457 584 - -
Trme4363g00001 613 PRINTS Metabotropic glutamate GPCR signature 29 45 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme4363g00001 613 PRINTS Metabotropic glutamate GPCR signature 10 29 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme4363g00001 613 PRINTS Metabotropic glutamate GPCR signature 45 62 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme4363g00001 613 Pfam Receptor family ligand binding region 1 285 IPR001828 -
Trme4363g00001 613 Gene3D - 237 346 - -
Trme4363g00001 613 Gene3D - 347 456 - -
Trme4363g00001 613 Pfam Ligated ion channel L-glutamate- and glycine-binding site 364 448 IPR019594 GO:0004970|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4363g00001 Trme-Chr4363 8 2153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4363g00001 1 612 Ion Channels AT1G42540 65.309 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4363g00001 K05387 - gmx:102661260 1014.6