Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43589g00001 TTATCTGGACGCCTCCTTACAGCTCATGGTTACAGTGCTCCAGAATTTGAGTCGGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGAGTCGTAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTGA 141 0.4397 LSGRLLTAHGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSYDR 46
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43589g00001 46 PANTHER OS01G0253100 PROTEIN 7 45 - -
Trme43589g00001 46 ProSiteProfiles Protein kinase domain profile. 1 46 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43589g00001 46 SUPERFAMILY Protein kinase-like (PK-like) 9 45 IPR011009 -
Trme43589g00001 46 Pfam Protein tyrosine and serine/threonine kinase 11 45 IPR001245 GO:0004672|GO:0006468
Trme43589g00001 46 Gene3D Transferase(Phosphotransferase) domain 1 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43589g00001 Trme-Chr43589 289 429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43589g00001 1 46 Strubbelig Receptor Gene Family AT4G03390 80.435 2.59e-20 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme43589g00001 PK_Tyr_Ser-Thr 3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43589g00001 - - gmx:100793423 90.8929