Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme435537g00001 GTCGTTGTTACCGTCCCAGCATACTTCAACAACTCCCAGCGCCAGGCCACGAAGGATGCTGGACTCATTGCGGGTCTTAATGTTGTGCGTATCATCAACGAACCCACCGCTGCTGCCCTTGCCTATGGCCTTGACAAGAAGGCCACCGATGATTGTAAGGTGTTGATTTTTGATCTTGGTGGCGGTACTTTTGATGTCTCTCTTTTAACCATTGATGGGGGTTTCTTTGACGTTATGGCCACTGCCGGAGACACCCATCTTGGAGGTGAAGACTTTGATAACATTGTTGTTAAC 294 0.4898 VVVTVPAYFNNSQRQATKDAGLIAGLNVVRIINEPTAAALAYGLDKKATDDCKVLIFDLGGGTFDVSLLTIDGGFFDVMATAGDTHLGGEDFDNIVVN 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme435537g00001 98 SUPERFAMILY Actin-like ATPase domain 2 96 IPR043129 -
Trme435537g00001 98 Gene3D - 47 87 - -
Trme435537g00001 98 Gene3D Actin; Chain A, domain 4 88 98 - -
Trme435537g00001 98 ProSitePatterns Heat shock hsp70 proteins family signature 2. 56 69 IPR018181 -
Trme435537g00001 98 FunFam Endoplasmic reticulum chaperone BiP 1 60 - -
Trme435537g00001 98 Pfam Hsp70 protein 1 98 IPR013126 GO:0005524|GO:0140662
Trme435537g00001 98 PRINTS 70kDa heat shock protein signature 1 21 - -
Trme435537g00001 98 PRINTS 70kDa heat shock protein signature 62 72 - -
Trme435537g00001 98 Gene3D - 1 46 - -
Trme435537g00001 98 PANTHER HEAT SHOCK PROTEIN 70KDA 1 98 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme435537g00001 Trme-Chr435537 3 296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme435537g00001 2 98 Calmodulin-binding Proteins AT5G02500 82.828 7.16e-50 162