Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43520g00001 GGTGTTAGCAAGGAAGAGGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTTGTTGAGCTACGCATAGCGGACATAATAGACCGCTATGGTAAGCCACTATCCTTAACTCAAATCGTGCAAAATCTTGACGATGCACCTTCCCCTGATTCCACTCTTCTCCTAAGAGTATTGAGAGTGATGGTTCGTCGAAAGATTTTCAGCGCAGAAAAATCTGAAACCGGAGAGATTCTCTACGGTTTAACACGTGCATCGAAATGGATCCTACAAGACACAAAATTGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTATATAAGTGAAATTGTAAGAGAAGGAACCAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACAGGTTTGGATGCAAAATACAATGATTTGTTTAATCAAGGTATGGTTTGCACTGCTAGGATTGTGTCTAGAGCTGTTATTGCTGGATACAAAGATGGGTTTAATCAAATTCAATCTTTGGTTGATGTTGGTGGTGGTATTGGAGGATCTCTTTCTGAGATTGTTAGAGCTTATCCTCATATTCAAGCTATTAACTTTGATTTGCCTCATGTTGTTTCAACTGCACCTAATTTTGATGGTATCACTCATGTTGGAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATCTACATGAAGGTATAA 771 0.3878 GVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLDDAPSPDSTLLLRVLRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKLTLAPMLLLENHPFHLNPANYISEIVREGTKNGTAFFRCHGHEQFEMTGLDAKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIQSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43520g00001 256 Gene3D Vaccinia Virus protein VP39 104 256 IPR029063 -
Trme43520g00001 256 PANTHER O-METHYLTRANSFERASE 16 255 IPR016461 GO:0008168
Trme43520g00001 256 SUPERFAMILY "Winged helix" DNA-binding domain 6 105 IPR036390 -
Trme43520g00001 256 Gene3D - 2 102 IPR036388 -
Trme43520g00001 256 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 254 IPR029063 -
Trme43520g00001 256 Pfam Dimerisation domain 28 76 IPR012967 GO:0046983
Trme43520g00001 256 Pfam O-methyltransferase domain 128 255 IPR001077 GO:0008171
Trme43520g00001 256 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 256 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43520g00001 Trme-Chr43520 190 960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43520g00001 27 255 Monolignol Biosynthesis Gene Families AT5G54160 35.897 3.14e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43520g00001 K22588 - gmx:100800801 452.981