Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme434g00001 ATGATCTTACGATCCCCAACCCTGAAACCATGTCGTGTTCCTGTGAAGATCGCCGAAAGCCACTTTGTGGTCAAGATCGCGTTCTTTGGAGTAGGATCGCAACTCCATCGTGCTGGTTGCGTCCGTTTGGGGTTTCTGAGCTCGAGCCGGGGGACACTTAATGATGGAAGATTTGTGGCTGTAAAACAATTATCTATAGGATCCCATCAAGGAAAGAGCCAGTTTGTAGCTGAGATTGCAACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATATGGATGCTGTATTGAAGGCAGTAAAAGACTTCTTGTTTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTACTCAATTGGTCAACCCGCTATGATGTTTGTATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCACGGATCCGGATTGTGCACCGTGATGTGAAAGCTAGTAATATTCTACTCGACTCCGAGCTTGTCCCAAAAATATCTGACTTTGGATTGGCCAAATTATATGATGATAAAAAAACGCATATAAGCACCCGTGTTGCTGGGACGATTGGATATCTTGCACCGGAGTATGCCATGCGTGGTCACCTCACAGAGAAAGCAGATGTTTTTTCCTTTGGTGTTGTGGCTCTTGAGTTAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAAAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAACTGTATAAACGATCTGATAGATTCTAGACTATCAGAATTCAACATGGAAGAAGTYCAACGCCTTGTGAAAATAGGACTTTTGTGCACTCAGACATCACCAAACTTACGGCCATCAATGTCACGTGTAGTGGCAATGCTTTCAGGAGATATTGAAGTGAGTGCTGTAACATCAAGGCCCGGATACTTGACTGACTGGAAATTTGATGATGTTAGCAGCATCATGACTGATATTTCAACGAGGGGATTGGATACAAGTTATTACAATTCATCAGCAAGTCCCAGCACAGTTGGTGGTGCATATATTCATTCACCAATTGATCCATCTAAATCCATCCTTCAGGAGACTGTTAGAGATGGTAGGTAA 1128 0.4211 MILRSPTLKPCRVPVKIAESHFVVKIAFFGVGSQLHRAGCVRLGFLSSSRGTLNDGRFVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLLLNWSTRYDVCMGVARGLTYLHEESRIRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCINDLIDSRLSEFNMEEVQRLVKIGLLCTQTSPNLRPSMSRVVAMLSGDIEVSAVTSRPGYLTDWKFDDVSSIMTDISTRGLDTSYYNSSASPSTVGGAYIHSPIDPSKSILQETVRDGR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme434g00001 375 Gene3D Phosphorylase Kinase; domain 1 32 109 - -
Trme434g00001 375 SMART serkin_6 23 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme434g00001 375 Pfam Protein tyrosine and serine/threonine kinase 53 301 IPR001245 GO:0004672|GO:0006468
Trme434g00001 375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 44 327 - -
Trme434g00001 375 SUPERFAMILY Protein kinase-like (PK-like) 52 326 IPR011009 -
Trme434g00001 375 CDD STKc_IRAK 44 301 - -
Trme434g00001 375 Gene3D Transferase(Phosphotransferase) domain 1 110 312 - -
Trme434g00001 375 ProSiteProfiles Protein kinase domain profile. 32 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme434g00001 375 FunFam Putative LRR receptor-like serine/threonine-protein kinase 110 313 - -
Trme434g00001 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme434g00001 Trme-Chr434 1143 3457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme434g00001 44 348 Receptor kinase-like Gene Family AT1G56120 73.290 2.35e-152 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme434g00001 PK_Tyr_Ser-Thr 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme434g00001 - - mtr:25502389 584.334