Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4348g00001 ATGAATCCTCATTGGGAGAAGTGTCCGTATTTTGTTTATAAGATGTTGTTTGACCTGAAGAAACCTTCTCATCCTACTCGTGGAGTTCCAACTGCTATCAATTGCCTATCAACTCTACTTAAGGAACCTGTAGTTAGGTCTTCCTTTGTTCAAGCTGATGGGGTCAAGTTGCTTGTGCCACTGATTTGTCCAGCATCCACTCAACAATCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCATATTATGAACCCGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCAAGACTGATTGATGTTGTTAAGAGTTCTACAAAAGAAAAGGTTGTTAGAGTTGTTGTCTTGACACTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGATCTTCAGCTGCCACAAGTTGTTCAAAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAACTCTTTGGAAGAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTTGGCAATCTGGATTG 578 0.3997 MNPHWEKCPYFVYKMLFDLKKPSHPTRGVPTAINCLSTLLKEPVVRSSFVQADGVKLLVPLICPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4348g00001 192 SMART arm_5 87 128 IPR000225 GO:0005515
Trme4348g00001 192 SMART arm_5 41 86 IPR000225 GO:0005515
Trme4348g00001 192 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 15 192 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trme4348g00001 192 Gene3D - 4 177 IPR011989 -
Trme4348g00001 192 Pfam V-ATPase subunit H 21 169 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trme4348g00001 192 SUPERFAMILY ARM repeat 18 191 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4348g00001 Trme-Chr4348 71 1906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4348g00001 19 192 Primary Pumps ATPases(2) AT3G42050 85.057 1.09e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4348g00001 K02144 - gmx:100788723 322.398