Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme434589g00001 ATGTCTGAATTTATAGCCACACAAGGCCCACTGCCACACACTTATGAAGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAG 104 0.4135 MSEFIATQGPLPHTYEDFWEMIIQYHCPAIVMLT 34
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme434589g00001 34 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 34 IPR029021 -
Trme434589g00001 34 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 2 34 - -
Trme434589g00001 34 ProSiteProfiles PTP type protein phosphatase domain profile. 1 34 IPR000242 GO:0004725|GO:0006470
Trme434589g00001 34 Gene3D Protein tyrosine phosphatase superfamily 1 34 IPR029021 -
Trme434589g00001 34 Pfam Protein-tyrosine phosphatase 2 34 IPR000242 GO:0004725|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme434589g00001 1 34 Protein tyrosine phosphatase (PTP) family AT1G71860 82.353 3.55e-17 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme434589g00001 - - pvu:PHAVU_007G087900g 74.3294