Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4342g00001 ATGATATGGTATGATTTATGCATCATAGGTTATTCTAGCGAGAATTCCACAGGAAAAGTTATTGTAGAACCCTCATGGAATGTAACCGGATCCAAACTTGCTAAGGACTCAACAGAACTTGCGAAAGTAGAAAATACCATGACAAGTTTGATAGGAAAAATGAGTATAGCAGCCACTTCCAATTGGGCAACGGGTGAGTTCAATTGGAGCGACAACGAGAAAAGGTATGGTTTGGTGCAGTGTAATAGATTACTTAGTAAGGACGGTTGCAAACAGTGTTTAGAGGCTATGTTGGATAGAGTTCCTCGATGCTGTGGAACGACGGTAGGATGGGTAGTTGTGTGTCCTAGTTGTGGGATGAAGATTAATGATTATAATTTCTACCAACACAGAATCTCCTTCCCCTATTCCAAATCCAGTAGCTCTACTAATTTGTTGTGTATGCTACTACTGGAGAAAGAATGGATTAAGCAAAGGACTGCTACTCCTATATCTTTCCGTGATCATGCTGAAAGAGACAATAAGTCTCCTATTACTGTTGAGGACCTTCCTACAATCCCTTTAATTGTAATTAAACATATCACAGATAACTTTTCGGAGTTATCTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTACTTTACCAGACGGCACAGAAGTTGCGGTGAAAAGGCTTTCAGAAACATCAGGTCAAGGTTCAGAGGAGTTCAAGAATGAAGTAATATTCATAGCTAAACTGCAACACAGAAACCTTGTGAGACTCTTGGGTTGCTGCATTGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNTCTCACCTTTTCGATAAGGAAAAGCATAAGCAACTGGATTGGAAATTACGACTAAGCATTATCAATGGAATCGCAAAAGGACTTCTTTACCTTCATGAGGATTCTCGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGACTCCAAAAATATCAGATTTTGGATTGGCTAGGACATTTGAAAAAGACCAATGTCAGACAAAAACAAAACGAGTTATCGGCACCTAG 1092 0.3755 MIWYDLCIIGYSSENSTGKVIVEPSWNVTGSKLAKDSTELAKVENTMTSLIGKMSIAATSNWATGEFNWSDNEKRYGLVQCNRLLSKDGCKQCLEAMLDRVPRCCGTTVGWVVVCPSCGMKINDYNFYQHRISFPYSKSSSSTNLLCMLLLEKEWIKQRTATPISFRDHAERDNKSPITVEDLPTIPLIVIKHITDNFSELSKLGEGGFGPVYKGTLPDGTEVAVKRLSETSGQGSEEFKNEVIFIAKLQHRNLVRLLGCCIXXXXXXXXXXXXXXXXXXSHLFDKEKHKQLDWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDDEMTPKISDFGLARTFEKDQCQTKTKRVIGT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4342g00001 363 Pfam Protein tyrosine and serine/threonine kinase 202 357 IPR001245 GO:0004672|GO:0006468
Trme4342g00001 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Trme4342g00001 363 FunFam Os07g0541700 protein 278 363 - -
Trme4342g00001 363 Gene3D Transferase(Phosphotransferase) domain 1 280 363 - -
Trme4342g00001 363 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 145 363 - -
Trme4342g00001 363 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 174 268 - -
Trme4342g00001 363 SMART serkin_6 198 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4342g00001 363 Gene3D Phosphorylase Kinase; domain 1 159 267 - -
Trme4342g00001 363 ProSiteProfiles Gnk2-homologous domain profile. 22 127 IPR002902 -
Trme4342g00001 363 Gene3D - 25 127 IPR038408 -
Trme4342g00001 363 SUPERFAMILY Protein kinase-like (PK-like) 177 363 IPR011009 -
Trme4342g00001 363 Pfam Salt stress response/antifungal 41 123 IPR002902 -
Trme4342g00001 363 ProSiteProfiles Protein kinase domain profile. 198 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4342g00001 Trme-Chr4342 15 2049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4342g00001 1 363 Receptor kinase-like Gene Family AT4G05200 38.734 2.20e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme4342g00001 PK_Tyr_Ser-Thr 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4342g00001 - - mtr:11406796 492.271